BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= st001c03 (351 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.3532 EST191740 Rattus norvegicus cDNA, 3' end /clone=... 34 0.25 gnl|UG|Rn.23897 EST211243 Rattus norvegicus cDNA, 3' end /clone... 32 0.99 gnl|UG|Rn.813 EST223024 Rattus norvegicus cDNA, 3' end /clone=R... 32 0.99 gnl|UG|Rn.7592 EST199057 Rattus norvegicus cDNA, 3' end /clone=... 30 3.9 gnl|UG|Rn.23136 UI-R-E1-fr-e-02-0-UI.s1 Rattus norvegicus cDNA,... 30 3.9 >gnl|UG|Rn.3532 EST191740 Rattus norvegicus cDNA, 3' end /clone=RLUAI62 /clone_end=3' /gb=AA848978 /gi=2936518 /len=505 Length = 505 Score = 34.3 bits (17), Expect = 0.25 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 333 tctgtatcttgaagctc 349 ||||||||||||||||| Sbjct: 406 tctgtatcttgaagctc 390 >gnl|UG|Rn.23897 EST211243 Rattus norvegicus cDNA, 3' end /clone=RBRBX28 /clone_end=3' /gb=AI101954 /gi=3706795 /len=386 Length = 386 Score = 32.3 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 13 gaaagatgtggctgag 28 |||||||||||||||| Sbjct: 264 gaaagatgtggctgag 249 >gnl|UG|Rn.813 EST223024 Rattus norvegicus cDNA, 3' end /clone=RSPCF29 /clone_end=3' /gb=AI179329 /gi=3729967 /len=602 Length = 602 Score = 32.3 bits (16), Expect = 0.99 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 57 ggctctgaagaacaca 72 |||||||||||||||| Sbjct: 57 ggctctgaagaacaca 42 >gnl|UG|Rn.7592 EST199057 Rattus norvegicus cDNA, 3' end /clone=RBRAL48 /clone_end=3' /gb=AA943558 /gi=3103474 /len=555 Length = 555 Score = 30.3 bits (15), Expect = 3.9 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 7 ggaggtgaaagatgt 21 ||||||||||||||| Sbjct: 335 ggaggtgaaagatgt 321 >gnl|UG|Rn.23136 UI-R-E1-fr-e-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-fr-e-02-0-UI /clone_end=3' /gb=AA956757 /gi=3120452 /len=592 Length = 592 Score = 30.3 bits (15), Expect = 3.9 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 306 taagcaccacaagtt 320 ||||||||||||||| Sbjct: 274 taagcaccacaagtt 260 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.38 0.711 1.31 Gapped Lambda K H 1.38 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2087 Number of Sequences: 23003 Number of extensions: 2087 Number of successful extensions: 600 Number of sequences better than 10: 9 length of query: 351 length of database: 15818664 effective HSP length: 16 effective length of query: 335 effective length of database: 15450616 effective search space: 5175956360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.7 bits) S1: 0 ( 0.5 bits) S2: 15 (30.3 bits)