BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 905c01 (380 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.15875 UI-R-C1-jx-g-01-0-UI.s1 Rattus norvegicus cDNA,... 32 1.1 gnl|UG|Rn.21937 UI-R-C1-ku-d-05-0-UI.s2 Rattus norvegicus cDNA,... 32 1.1 >gnl|UG|Rn.15875 UI-R-C1-jx-g-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-jx-g-01-0-UI /clone_end=3' /gb=AI044327 /gi=3291230 /len=472 Length = 472 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 145 aacagaattttaatct 160 |||||||||||||||| Sbjct: 374 aacagaattttaatct 359 >gnl|UG|Rn.21937 UI-R-C1-ku-d-05-0-UI.s2 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-ku-d-05-0-UI /clone_end=3' /gb=AI071453 /gi=3397668 /len=464 Length = 464 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 112 gaacaacagcaaaaaa 127 |||||||||||||||| Sbjct: 27 gaacaacagcaaaaaa 12 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2912 Number of Sequences: 23003 Number of extensions: 2912 Number of successful extensions: 805 Number of sequences better than 10: 15 length of query: 380 length of database: 15818664 effective HSP length: 16 effective length of query: 364 effective length of database: 15450616 effective search space: 5624024224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)