BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 881c10 (342 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel AS... 78 2e-14 gnl|UG|Rn.1427 Rattus norvegicus mRNA for AlF-C1, complete cds ... 34 0.26 gnl|UG|Rn.9741 Rattus norvegicus phospholipase C-beta1b mRNA, c... 32 1.0 gnl|UG|Rn.24285 EST216931 Rattus norvegicus cDNA, 3' end /clone... 30 4.0 gnl|UG|Rn.28032 EST210127 Rattus norvegicus cDNA, 3' end /clone... 30 4.0 >gnl|UG|Rn.9787 Rattus norvegicus proton gated cation channel ASIC1 mRNA, complete cds /cds=(122,1702) /gb=U94403 /gi=2039365 /len=3488 Length = 3488 Score = 77.8 bits (39), Expect = 2e-14 Identities = 117/143 (81%), Positives = 117/143 (81%) Query: 165 ctgataaacaacttcagcaaagtggttggatataaaatttactcgaaaaaatcagtagcc 224 |||||||| ||||| ||||||| | ||| ||||||||| || | || ||||||| |||| Sbjct: 2377 ctgataaagaactttagcaaagcagctgggtataaaattaacccaaacaaatcagaagcc 2318 Query: 225 ttcctctactcaaaggattaaagggctaaggaagatattaaggaaattttaccaatcaaa 284 |||||||||||||||||| | |||| || | || |||| |||||| |||| ||| | Sbjct: 2317 ttcctctactcaaaggataagtaggctgagaaggaaattagggaaatgacaccattcaca 2258 Query: 285 atagtcacaaataatataaaata 307 ||||||||||| ||||||||||| Sbjct: 2257 atagtcacaaacaatataaaata 2235 Score = 46.1 bits (23), Expect = 7e-05 Identities = 23/23 (100%), Positives = 23/23 (100%) Query: 55 atatcactatttgcagatgatat 77 ||||||||||||||||||||||| Sbjct: 2449 atatcactatttgcagatgatat 2427 >gnl|UG|Rn.1427 Rattus norvegicus mRNA for AlF-C1, complete cds /cds=(90,1085) /gb=AB016536 /gi=3377278 /len=3061 Length = 3061 Score = 34.2 bits (17), Expect = 0.26 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 290 cacaaataatataaaat 306 ||||||||||||||||| Sbjct: 1461 cacaaataatataaaat 1445 >gnl|UG|Rn.9741 Rattus norvegicus phospholipase C-beta1b mRNA, complete alleles /cds=UNKNOWN /gb=L14323 /gi=294611 /len=7203 Length = 7203 Score = 32.2 bits (16), Expect = 1.0 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 22 gaagaggaagtcaaga 37 |||||||||||||||| Sbjct: 2970 gaagaggaagtcaaga 2985 >gnl|UG|Rn.24285 EST216931 Rattus norvegicus cDNA, 3' end /clone=RMUBE50 /clone_end=3' /gb=AI170987 /gi=3711027 /len=486 Length = 486 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 215 atcagtagccttcct 229 ||||||||||||||| Sbjct: 103 atcagtagccttcct 117 >gnl|UG|Rn.28032 EST210127 Rattus norvegicus cDNA, 3' end /clone=RBRBB43 /clone_end=3' /gb=AI100838 /gi=3705871 /len=406 Length = 406 Score = 30.2 bits (15), Expect = 4.0 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 161 atggctgataaacaa 175 ||||||||||||||| Sbjct: 157 atggctgataaacaa 171 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2641 Number of Sequences: 23003 Number of extensions: 2641 Number of successful extensions: 734 Number of sequences better than 10: 19 length of query: 342 length of database: 15818664 effective HSP length: 16 effective length of query: 326 effective length of database: 15450616 effective search space: 5036900816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)