BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 776e10 (274 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.27832 UI-R-BT0-pt-g-08-0-UI.s1 Rattus norvegicus cDNA... 180 1e-45 gnl|UG|Rn.7095 D85801 Rattus norvegicus cDNA /gb=D85801 /gi=146... 103 3e-22 gnl|UG|Rn.24540 EST227665 Rattus norvegicus cDNA, 3' end /clone... 70 4e-12 gnl|UG|Rn.24865 UI-R-E1-fd-g-06-0-UI.s1 Rattus norvegicus cDNA,... 64 2e-10 gnl|UG|Rn.15148 UI-R-E0-dc-h-08-0-UI.s1 Rattus norvegicus cDNA,... 40 0.003 >gnl|UG|Rn.27832 UI-R-BT0-pt-g-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-pt-g-08-0-UI /clone_end=3' /gb=AI145171 /gi=3666970 /len=324 Length = 324 Score = 180 bits (91), Expect = 1e-45 Identities = 110/117 (94%), Positives = 110/117 (94%) Query: 64 gtctcganccagggtttcccactgtgcttcccanatattttctatctggtgtacttgggg 123 |||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 132 gtctggagccagggtttcccactgtgcttcccaaatattttctacctggtgtacttgggg 73 Query: 124 tctatattttggtgaataaagttataggaggcccttcctcttctggcttgacacgaa 180 | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 72 tatatagtttggtgaataaagttacaggaggcccttcctcttctggcttgacacgaa 16 Score = 75.8 bits (38), Expect = 6e-14 Identities = 44/46 (95%), Positives = 44/46 (95%) Query: 6 tcttcctggatatttccctagtttattcaggtcacgtagttggtct 51 ||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct: 174 tcttcctggatatttccctagtttattcaggtcacatagtcggtct 129 >gnl|UG|Rn.7095 D85801 Rattus norvegicus cDNA /gb=D85801 /gi=1469815 /len=430 Length = 430 Score = 103 bits (52), Expect = 3e-22 Identities = 82/93 (88%), Positives = 82/93 (88%) Query: 30 attcaggtcacgtagttggtcttttgttactgaagtctcganccagggtttcccactgtg 89 ||||||||||||| || |||||||||||| ||||| ||| |||||||||||||||||| Sbjct: 305 attcaggtcacgttgtctgtcttttgttaccaaagtcacgagccagggtttcccactgtg 364 Query: 90 cttcccanatattttctatctggtgtacttggg 122 ||||||| |||||||||| | |||| ||||||| Sbjct: 365 cttcccagatattttctaccnggtgaacttggg 397 >gnl|UG|Rn.24540 EST227665 Rattus norvegicus cDNA, 3' end /clone=REMDD67 /clone_end=3' /gb=AI230977 /gi=3814857 /len=379 Length = 379 Score = 44.1 bits (22), Expect = 2e-04 Identities = 22/22 (100%), Positives = 22/22 (100%) Query: 157 cttcctcttctggcttgacacg 178 |||||||||||||||||||||| Sbjct: 22 cttcctcttctggcttgacacg 1 Score = 69.9 bits (35), Expect = 4e-12 Identities = 74/86 (86%), Positives = 74/86 (86%), Gaps = 1/86 (1%) Query: 7 cttcctggatatttccctagtttattcaggtcacgtagttggtcttttgttactgaagtc 66 |||||||| ||||| |||| |||||||||| ||| |||| |||| |||||||| |||||| Sbjct: 173 cttcctggctattttcctaatttattcaggccacatagtcggtcctttgttaccgaagtc 114 Query: 67 tcganccagggtttcccactgtgctt 92 || | ||||| || |||||||||||| Sbjct: 113 tc-agccaggattccccactgtgctt 89 >gnl|UG|Rn.24865 UI-R-E1-fd-g-06-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-fd-g-06-0-UI /clone_end=3' /gb=AA955831 /gi=3119526 /len=286 Length = 286 Score = 63.9 bits (32), Expect = 2e-10 Identities = 45/50 (90%), Positives = 45/50 (90%) Query: 63 agtctcganccagggtttcccactgtgcttcccanatattttctatctgg 112 |||| ||| ||||||||||||||||||||||||| ||||||||| |||| Sbjct: 213 agtcacgagccagggtttcccactgtgcttcccagttattttctacctgg 164 Score = 38.2 bits (19), Expect = 0.013 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 157 cttcctcttctggcttgacacga 179 |||||||| |||||||||||||| Sbjct: 41 cttcctctcctggcttgacacga 19 Score = 58.0 bits (29), Expect = 1e-08 Identities = 61/72 (84%), Positives = 61/72 (84%) Query: 5 atcttcctggatatttccctagtttattcaggtcacgtagttggtcttttgttactgaag 64 |||||| ||||| | |||||| || ||||||||| | |||| ||||||||||||| |||| Sbjct: 286 atcttcttggatttctccctaattaattcaggtctcctagtcggtcttttgttaccgaag 227 Query: 65 tctcganccagg 76 || ||| ||||| Sbjct: 226 tcacgagccagg 215 >gnl|UG|Rn.15148 UI-R-E0-dc-h-08-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-dc-h-08-0-UI /clone_end=3' /gb=AA901193 /gi=3036547 /len=548 Length = 548 Score = 40.1 bits (20), Expect = 0.003 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 75 gggtttcccactgtgcttcc 94 |||||||||||||||||||| Sbjct: 111 gggtttcccactgtgcttcc 92 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1770 Number of Sequences: 23003 Number of extensions: 1770 Number of successful extensions: 514 Number of sequences better than 10: 14 length of query: 274 length of database: 15818664 effective HSP length: 16 effective length of query: 258 effective length of database: 15450616 effective search space: 3986258928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)