BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 770d05 (376 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.33655 UI-R-BT0-qf-d-11-0-UI.s1 Rattus norvegicus cDNA... 34 0.28 gnl|UG|Rn.8381 EST205795 Rattus norvegicus cDNA, 3' end /clone=... 32 1.1 gnl|UG|Rn.4013 UI-R-A0-bf-g-10-0-UI.s1 Rattus norvegicus cDNA, ... 32 1.1 gnl|UG|Rn.9547 EST216325 Rattus norvegicus cDNA, 3' end /clone=... 32 1.1 gnl|UG|Rn.10122 Rattus norvegicus kappa1 opioid receptor mRNA, ... 30 4.4 >gnl|UG|Rn.33655 UI-R-BT0-qf-d-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-BT0-qf-d-11-0-UI /clone_end=3' /gb=AI145483 /gi=3667282 /len=557 Length = 557 Score = 34.2 bits (17), Expect = 0.28 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 23 ttctttctgtacaaact 39 ||||||||||||||||| Sbjct: 162 ttctttctgtacaaact 146 >gnl|UG|Rn.8381 EST205795 Rattus norvegicus cDNA, 3' end /clone=ROVAT64 /clone_end=3' /gb=AI011344 /gi=3225176 /len=494 Length = 494 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 128 agaaaatgtcttcctt 143 |||||||||||||||| Sbjct: 318 agaaaatgtcttcctt 333 >gnl|UG|Rn.4013 UI-R-A0-bf-g-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A0-bf-g-10-0-UI /clone_end=3' /gb=AA819547 /gi=2889636 /len=549 Length = 549 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 148 gcggttcttccatgaa 163 |||||||||||||||| Sbjct: 194 gcggttcttccatgaa 179 >gnl|UG|Rn.9547 EST216325 Rattus norvegicus cDNA, 3' end /clone=RLUCH81 /clone_end=3' /gb=AI170399 /gi=3710439 /len=651 Length = 651 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 128 agaaaatgtcttcctt 143 |||||||||||||||| Sbjct: 174 agaaaatgtcttcctt 189 >gnl|UG|Rn.10122 Rattus norvegicus kappa1 opioid receptor mRNA, complete cds /cds=(256,1398) /gb=U00442 /gi=403486 /len=4742 Length = 4742 Score = 30.2 bits (15), Expect = 4.4 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 224 tcttccccagaaaaa 238 ||||||||||||||| Sbjct: 3726 tcttccccagaaaaa 3740 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2821 Number of Sequences: 23003 Number of extensions: 2821 Number of successful extensions: 765 Number of sequences better than 10: 13 length of query: 376 length of database: 15818664 effective HSP length: 16 effective length of query: 360 effective length of database: 15450616 effective search space: 5562221760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)