BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 769a12 (273 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.29909 Rat mRNA for 5E5 antigen, complete cds /cds=(76... 58 1e-08 gnl|UG|Rn.30595 Rattus norvegicus Maxp1 mRNA, complete cds /cds... 46 5e-05 gnl|UG|Rn.3975 Rattus norvegicus myo-inositol monophosphatase (... 44 2e-04 gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 42 8e-04 gnl|UG|Rn.21231 UI-R-C1-lo-f-10-0-UI.s1 Rattus norvegicus cDNA,... 36 0.051 >gnl|UG|Rn.29909 Rat mRNA for 5E5 antigen, complete cds /cds=(765,3242) /gb=D37934 /gi=531260 /len=4492 Length = 4492 Score = 58.0 bits (29), Expect = 1e-08 Identities = 33/35 (94%), Positives = 33/35 (94%) Query: 223 ggtcgacggtatcganaagctngatatcgaattcc 257 ||||||||||||||| ||||| ||||||||||||| Sbjct: 3 ggtcgacggtatcgataagcttgatatcgaattcc 37 >gnl|UG|Rn.30595 Rattus norvegicus Maxp1 mRNA, complete cds /cds=(128,1369) /gb=AF002251 /gi=2459832 /len=3471 Length = 3471 Score = 46.1 bits (23), Expect = 5e-05 Identities = 27/29 (93%), Positives = 27/29 (93%) Query: 222 aggtcgacggtatcganaagctngatatc 250 |||||||||||||||| ||||| |||||| Sbjct: 3454 aggtcgacggtatcgataagcttgatatc 3426 >gnl|UG|Rn.3975 Rattus norvegicus myo-inositol monophosphatase (IMP) mRNA, complete cds /cds=(68,901) /gb=U84038 /gi=1778607 /len=2031 Length = 2031 Score = 44.1 bits (22), Expect = 2e-04 Identities = 29/32 (90%), Positives = 29/32 (90%) Query: 226 cgacggtatcganaagctngatatcgaattcc 257 |||||| ||||| ||||| ||||||||||||| Sbjct: 1 cgacggcatcgataagcttgatatcgaattcc 32 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 42.1 bits (21), Expect = 8e-04 Identities = 23/24 (95%), Positives = 23/24 (95%) Query: 250 cgaattcctgcancccgggggatc 273 |||||||||||| ||||||||||| Sbjct: 227 cgaattcctgcagcccgggggatc 250 >gnl|UG|Rn.21231 UI-R-C1-lo-f-10-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C1-lo-f-10-0-UI /clone_end=3' /gb=AI069954 /gi=3396205 /len=360 Length = 360 Score = 36.2 bits (18), Expect = 0.051 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 15 acatagtgagttcctggccaac 36 |||||||||||||| ||||||| Sbjct: 229 acatagtgagttccaggccaac 208 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1114 Number of Sequences: 23003 Number of extensions: 1114 Number of successful extensions: 339 Number of sequences better than 10: 16 length of query: 273 length of database: 15818664 effective HSP length: 16 effective length of query: 257 effective length of database: 15450616 effective search space: 3970808312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)