BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 753a01 (286 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.32288 EST196536 Rattus norvegicus cDNA, 3' end /clone... 86 6e-17 gnl|UG|Rn.10158 Rattus norvegicus surface protein MCA-32 (MCA-3... 70 4e-12 gnl|UG|Rn.25096 EST213644 Rattus norvegicus cDNA, 3' end /clone... 70 4e-12 gnl|UG|Rn.32302 EST197639 Rattus norvegicus cDNA, 3' end /clone... 70 4e-12 gnl|UG|Rn.34132 EST226997 Rattus norvegicus cDNA, 3' end /clone... 70 4e-12 >gnl|UG|Rn.32288 EST196536 Rattus norvegicus cDNA, 3' end /clone=RKIAW56 /clone_end=3' /gb=AA892733 /gi=3019612 /len=440 Length = 440 Score = 85.7 bits (43), Expect = 6e-17 Identities = 46/47 (97%), Positives = 46/47 (97%) Query: 45 aactcagaacctgtggaagagtagtcagtgctcttaaccactgagcc 91 ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 94 aactcagaacctgtggaagagcagtcagtgctcttaaccactgagcc 140 >gnl|UG|Rn.10158 Rattus norvegicus surface protein MCA-32 (MCA-32) mRNA, complete cds /cds=(21,827) /gb=U39546 /gi=1136500 /len=1659 Length = 1659 Score = 69.9 bits (35), Expect = 4e-12 Identities = 44/47 (93%), Positives = 44/47 (93%) Query: 45 aactcagaacctgtggaagagtagtcagtgctcttaaccactgagcc 91 ||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 1453 aactcaggacctctggaagagcagtcagtgctcttaaccactgagcc 1407 >gnl|UG|Rn.25096 EST213644 Rattus norvegicus cDNA, 3' end /clone=RHECC24 /clone_end=3' /gb=AI104355 /gi=3708726 /len=468 Length = 468 Score = 69.9 bits (35), Expect = 4e-12 Identities = 44/47 (93%), Positives = 44/47 (93%) Query: 45 aactcagaacctgtggaagagtagtcagtgctcttaaccactgagcc 91 ||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 251 aactcaggacctctggaagagcagtcagtgctcttaaccactgagcc 205 >gnl|UG|Rn.32302 EST197639 Rattus norvegicus cDNA, 3' end /clone=RPLAM26 /clone_end=3' /gb=AA893836 /gi=3020715 /len=520 Length = 520 Score = 69.9 bits (35), Expect = 4e-12 Identities = 44/47 (93%), Positives = 44/47 (93%) Query: 45 aactcagaacctgtggaagagtagtcagtgctcttaaccactgagcc 91 ||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 508 aactcaggacctctggaagagcagtcagtgctcttaaccactgagcc 462 >gnl|UG|Rn.34132 EST226997 Rattus norvegicus cDNA, 3' end /clone=REMCU79 /clone_end=3' /gb=AI230302 /gi=3814189 /len=417 Length = 417 Score = 69.9 bits (35), Expect = 4e-12 Identities = 44/47 (93%), Positives = 44/47 (93%) Query: 45 aactcagaacctgtggaagagtagtcagtgctcttaaccactgagcc 91 ||||||| ||||||||||||| ||||||||||||||||| ||||||| Sbjct: 118 aactcaggacctgtggaagagcagtcagtgctcttaacccctgagcc 164 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1674 Number of Sequences: 23003 Number of extensions: 1674 Number of successful extensions: 636 Number of sequences better than 10: 178 length of query: 286 length of database: 15818664 effective HSP length: 16 effective length of query: 270 effective length of database: 15450616 effective search space: 4171666320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)