BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 104a09 (267 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, ... 94 2e-19 gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 76 6e-14 gnl|UG|Rn.34394 EST213402 Rattus norvegicus cDNA, 3' end /clone... 60 3e-09 gnl|UG|Rn.29017 EST220261 Rattus norvegicus cDNA, 3' end /clone... 60 3e-09 gnl|UG|Rn.3550 EST197063 Rattus norvegicus cDNA, 3' end /clone=... 58 1e-08 >gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-cz-g-01-0-UI /clone_end=3' /gb=AA899248 /gi=3034602 /len=447 Length = 447 Score = 93.7 bits (47), Expect = 2e-19 Identities = 77/88 (87%), Positives = 77/88 (87%) Query: 5 agagaaacgagtgaaaganctgaaggggcttacaaccccataaaaacaacaatgccaacc 64 ||||||| || |||| || |||||||||||| ||||||||||| ||||||||| |||||| Sbjct: 377 agagaaaggattgaaggagctgaaggggcttgcaaccccataagaacaacaataccaacc 318 Query: 65 aaccanancttccagggactaaaccact 92 ||| | | || ||||||||||||||||| Sbjct: 317 aactagagctcccagggactaaaccact 290 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 75.8 bits (38), Expect = 6e-14 Identities = 61/69 (88%), Positives = 61/69 (88%) Query: 1 aattagagaaacgagtgaaaganctgaaggggcttacaaccccataaaaacaacaatgcc 60 ||||||||||| || |||| || |||||||| ||| ||||||||||| ||||||||| || Sbjct: 689 aattagagaaaggattgaaggagctgaagggacttgcaaccccataagaacaacaatacc 748 Query: 61 aaccaacca 69 ||||||||| Sbjct: 749 aaccaacca 757 >gnl|UG|Rn.34394 EST213402 Rattus norvegicus cDNA, 3' end /clone=RHEBX45 /clone_end=3' /gb=AI104113 /gi=3708524 /len=463 Length = 463 Score = 60.0 bits (30), Expect = 3e-09 Identities = 58/68 (85%), Positives = 58/68 (85%) Query: 25 tgaaggggcttacaaccccataaaaacaacaatgccaaccaaccanancttccagggact 84 ||||||||||| |||||||| ||||| |||||||| |||||| | |||||||||||| Sbjct: 369 tgaaggggcttgagaccccatatgaacaataatgccaagcaaccagagcttccagggact 310 Query: 85 aaaccact 92 || ||||| Sbjct: 309 aagccact 302 >gnl|UG|Rn.29017 EST220261 Rattus norvegicus cDNA, 3' end /clone=ROVBV34 /clone_end=3' /gb=AI176669 /gi=3727307 /len=663 Length = 663 Score = 60.0 bits (30), Expect = 3e-09 Identities = 40/44 (90%), Positives = 40/44 (90%) Query: 49 aacaacaatgccaaccaaccanancttccagggactaaaccact 92 |||||||||||||| |||||| | |||||||||||||| ||||| Sbjct: 520 aacaacaatgccaagcaaccagagcttccagggactaagccact 563 >gnl|UG|Rn.3550 EST197063 Rattus norvegicus cDNA, 3' end /clone=RKIBE21 /clone_end=3' /gb=AA893260 /gi=3020139 /len=514 Length = 514 Score = 58.0 bits (29), Expect = 1e-08 Identities = 39/43 (90%), Positives = 39/43 (90%) Query: 50 acaacaatgccaaccaaccanancttccagggactaaaccact 92 ||||||||||||| |||||| | |||||||||||||| ||||| Sbjct: 414 acaacaatgccaagcaaccagagcttccagggactaagccact 456 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1097 Number of Sequences: 23003 Number of extensions: 1097 Number of successful extensions: 280 Number of sequences better than 10: 17 length of query: 267 length of database: 15818664 effective HSP length: 16 effective length of query: 251 effective length of database: 15450616 effective search space: 3878104616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)