BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 094b01 (514 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.11272 Rattus norvegicus SH3 domain binding protein (C... 36 0.099 gnl|UG|Rn.3037 EST194639 Rattus norvegicus cDNA, 3' end /clone=... 36 0.099 gnl|UG|Rn.7380 EST216331 Rattus norvegicus cDNA, 3' end /clone=... 32 1.5 gnl|UG|Rn.9232 R.norvegicus mRNA for cyclin B /cds=(234,1505) /... 32 1.5 gnl|UG|Rn.10275 Rattus norvegicus alternatively spliced signal ... 32 1.5 >gnl|UG|Rn.11272 Rattus norvegicus SH3 domain binding protein (CR16) mRNA, complete cds /cds=(191,1546) /gb=U25281 /gi=1185396 /len=4359 Length = 4359 Score = 36.2 bits (18), Expect = 0.099 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 423 tgtgtgcacatgcatgtg 440 |||||||||||||||||| Sbjct: 3955 tgtgtgcacatgcatgtg 3938 >gnl|UG|Rn.3037 EST194639 Rattus norvegicus cDNA, 3' end /clone=RSPAN72 /clone_end=3' /gb=AA851870 /gi=2939410 /len=493 Length = 493 Score = 36.2 bits (18), Expect = 0.099 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 200 ccaccccatttaatgttt 217 |||||||||||||||||| Sbjct: 357 ccaccccatttaatgttt 374 >gnl|UG|Rn.7380 EST216331 Rattus norvegicus cDNA, 3' end /clone=RLUCH87 /clone_end=3' /gb=AI170405 /gi=3710445 /len=601 Length = 601 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 321 tgccttttgtttttaa 336 |||||||||||||||| Sbjct: 149 tgccttttgtttttaa 164 >gnl|UG|Rn.9232 R.norvegicus mRNA for cyclin B /cds=(234,1505) /gb=X64589 /gi=313807 /len=2354 Length = 2354 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 477 tgtggttgcttctgac 492 |||||||||||||||| Sbjct: 1634 tgtggttgcttctgac 1649 >gnl|UG|Rn.10275 Rattus norvegicus alternatively spliced signal transducer and regulator of transcription 5a2 (STAT5a2) mRNA, partial cds /cds=(0,3) /gb=U25137 /gi=1009021 /len=1740 Length = 1740 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 450 tgcatgtggaggccag 465 |||||||||||||||| Sbjct: 867 tgcatgtggaggccag 882 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5205 Number of Sequences: 23003 Number of extensions: 5205 Number of successful extensions: 427 Number of sequences better than 10: 10 length of query: 514 length of database: 15818664 effective HSP length: 17 effective length of query: 497 effective length of database: 15427613 effective search space: 7667523661 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)