BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 055b04 (427 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA,... 111 2e-24 gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 70 6e-12 gnl|UG|Rn.4272 UI-R-A0-aq-b-03-0-UI.s1 Rattus norvegicus cDNA, ... 32 1.3 gnl|UG|Rn.32281 Rattus norvegicus clone A-2 arylamine N-acetylt... 32 1.3 >gnl|UG|Rn.12103 UI-R-E0-dk-e-02-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-dk-e-02-0-UI /clone_end=3' /gb=AA900802 /gi=3036156 /len=476 Length = 476 Score = 111 bits (56), Expect = 2e-24 Identities = 56/56 (100%), Positives = 56/56 (100%) Query: 61 ttttttatatgttggggcatcttttgggtatatgcccaagagaggtatagctggat 116 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16 ttttttatatgttggggcatcttttgggtatatgcccaagagaggtatagctggat 71 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 69.9 bits (35), Expect = 6e-12 Identities = 91/109 (83%), Positives = 91/109 (83%), Gaps = 1/109 (0%) Query: 3 tctttccagtttntggttattatatataagg-tgcgatgaacatagtggagcacgtntct 61 ||||||||| || || |||||| |||||| ||| ||||||| ||||||||| || ||| Sbjct: 116 tctttccagcttctgtctattatgaataaggctgctatgaacagagtggagcatgtgtct 57 Query: 62 tttttatatgttggggcatcttttgggtatatgcccaagagaggtatag 110 || || |||||||| | || |||||||||||||||| ||||||||||| Sbjct: 56 ttgttgtatgttggagtctcatttgggtatatgcccaggagaggtatag 8 >gnl|UG|Rn.4272 UI-R-A0-aq-b-03-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A0-aq-b-03-0-UI /clone_end=3' /gb=AA819879 /gi=2889066 /len=520 Length = 520 Score = 32.2 bits (16), Expect = 1.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 344 aacacaagtgtgagca 359 |||||||||||||||| Sbjct: 217 aacacaagtgtgagca 232 >gnl|UG|Rn.32281 Rattus norvegicus clone A-2 arylamine N-acetyltransferase mRNA, complete cds /cds=(975,1847) /gb=U01344 /gi=786257 /len=2533 Length = 2533 Score = 32.2 bits (16), Expect = 1.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 19 ttattatatataaggt 34 |||||||||||||||| Sbjct: 2517 ttattatatataaggt 2502 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3120 Number of Sequences: 23003 Number of extensions: 3120 Number of successful extensions: 833 Number of sequences better than 10: 4 length of query: 427 length of database: 15818664 effective HSP length: 17 effective length of query: 410 effective length of database: 15427613 effective search space: 6325321330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)