BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02609 (488 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone... 111 2e-24 gnl|UG|Rn.14521 Rattus norvegicus olfactory receptor-like prote... 92 2e-18 gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOW... 52 2e-06 gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone... 34 0.37 >gnl|UG|Rn.34332 EST221119 Rattus norvegicus cDNA, 3' end /clone=RPLCA56 /clone_end=3' /gb=AI177487 /gi=3728125 /len=454 Length = 454 Score = 111 bits (56), Expect = 2e-24 Identities = 75/82 (91%), Positives = 75/82 (91%), Gaps = 1/82 (1%) Query: 275 tttgggctaata-ccacttatcnntgagtgcataccatgtntgtctntctgtgattgggt 333 |||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||| Sbjct: 249 tttgggctaatagccacttatcaatgagtgcataccatgtatgtctttctgtgattgggt 190 Query: 334 tanctcactcangatgatattt 355 || |||||||| |||||||||| Sbjct: 189 tagctcactcaggatgatattt 168 >gnl|UG|Rn.14521 Rattus norvegicus olfactory receptor-like protein (SCR D-2) gene, complete cds /cds=(0,965) /gb=AF034898 /gi=3153222 /len=1086 Length = 1086 Score = 91.7 bits (46), Expect = 2e-18 Identities = 71/80 (88%), Positives = 71/80 (88%), Gaps = 1/80 (1%) Query: 277 tgggctaatacc-acttatcnntgagtgcataccatgtntgtctntctgtgattgggtta 335 |||||||||||| ||||||| |||||||||||||||| ||| | |||| |||||||||| Sbjct: 1086 tgggctaatacccacttatcaatgagtgcataccatgtgtgtttttctgcgattgggtta 1027 Query: 336 nctcactcangatgatattt 355 |||||||| |||||||||| Sbjct: 1026 cctcactcaggatgatattt 1007 >gnl|UG|Rn.21396 R.norvegicus mRNA for LINE sequence /cds=UNKNOWN /gb=X71442 /gi=311509 /len=1050 Length = 1050 Score = 52.0 bits (26), Expect = 2e-06 Identities = 50/58 (86%), Positives = 50/58 (86%), Gaps = 1/58 (1%) Query: 298 tgagtgcataccatgtntgtctntctgtgattgggttanctcactcangatgatattt 355 |||||||| || |||| ||| | ||||||||||| ||| |||||||| |||||||||| Sbjct: 299 tgagtgcacactatgtgtgt-tttctgtgattggattacctcactcaggatgatattt 243 >gnl|UG|Rn.29314 EST223296 Rattus norvegicus cDNA, 3' end /clone=RSPCJ14 /clone_end=3' /gb=AI179574 /gi=3730212 /len=359 Length = 359 Score = 34.2 bits (17), Expect = 0.37 Identities = 34/39 (87%), Positives = 34/39 (87%), Gaps = 1/39 (2%) Query: 275 tttgggctaata-ccacttatcnntgagtgcataccatg 312 |||||| ||||| ||||||| | ||||||||||||||| Sbjct: 275 tttgggttaatatccacttaccagtgagtgcataccatg 237 Score = 32.2 bits (16), Expect = 1.5 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 323 tgtgattgggttanctcac 341 ||||||||||||| ||||| Sbjct: 202 tgtgattgggttacctcac 184 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1326 Number of Sequences: 23003 Number of extensions: 1326 Number of successful extensions: 356 Number of sequences better than 10: 4 length of query: 488 length of database: 15818664 effective HSP length: 17 effective length of query: 471 effective length of database: 15427613 effective search space: 7266405723 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)