BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02159 (629 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, ... 145 2e-34 gnl|UG|Rn.25716 Rat mRNA for delta-4-3-ketosteroid 5-beta-reduc... 109 1e-23 gnl|UG|Rn.24586 UI-R-A0-bl-h-04-0-UI.s1 Rattus norvegicus cDNA,... 90 9e-18 gnl|UG|Rn.16135 EST215189 Rattus norvegicus cDNA, 3' end /clone... 70 9e-12 gnl|UG|Rn.34325 EST229189 Rattus norvegicus cDNA, 3' end /clone... 68 3e-11 >gnl|UG|Rn.7001 UI-R-E0-cz-g-01-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E0-cz-g-01-0-UI /clone_end=3' /gb=AA899248 /gi=3034602 /len=447 Length = 447 Score = 145 bits (73), Expect = 2e-34 Identities = 97/105 (92%), Positives = 97/105 (92%) Query: 68 actacccaaagagtacacatggacaggcccaaggctccagctgcatatgtggcaaaggat 127 |||||||||||||||||||||||||| | || |||||||||||||||||| ||||||||| Sbjct: 292 actacccaaagagtacacatggacagactcatggctccagctgcatatgtagcaaaggat 233 Query: 128 ggctttgctgggcaccaatgggaggaaaagcccttggtcctgcca 172 ||| ||| |||||||||| ||||||| |||||||||||||||||| Sbjct: 232 ggccttgttgggcaccaacgggaggagaagcccttggtcctgcca 188 >gnl|UG|Rn.25716 Rat mRNA for delta-4-3-ketosteroid 5-beta-reductase, complete cds /cds=(40,1020) /gb=D17309 /gi=450474 /len=3189 Length = 3189 Score = 109 bits (55), Expect = 1e-23 Identities = 82/91 (90%), Positives = 82/91 (90%) Query: 82 acacatggacaggcccaaggctccagctgcatatgtggcaaaggatggctttgctgggca 141 |||||||||||| |||| |||||||||||| ||||| ||| |||||||| ||| |||||| Sbjct: 2684 acacatggacagacccatggctccagctgcctatgtagcagaggatggccttgttgggca 2625 Query: 142 ccaatgggaggaaaagcccttggtcctgcca 172 |||||||||||| | |||||||||||||||| Sbjct: 2624 ccaatgggaggagaggcccttggtcctgcca 2594 >gnl|UG|Rn.24586 UI-R-A0-bl-h-04-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-A0-bl-h-04-0-UI /clone_end=3' /gb=AA819429 /gi=2889518 /len=385 Length = 385 Score = 89.7 bits (45), Expect = 9e-18 Identities = 66/73 (90%), Positives = 66/73 (90%) Query: 100 ggctccagctgcatatgtggcaaaggatggctttgctgggcaccaatgggaggaaaagcc 159 |||||||||||||||| | ||| |||||||| ||| ||||||||||| | |||||||||| Sbjct: 369 ggctccagctgcatatatagcagaggatggccttgttgggcaccaatagaaggaaaagcc 310 Query: 160 cttggtcctgcca 172 ||||||||||||| Sbjct: 309 cttggtcctgcca 297 >gnl|UG|Rn.16135 EST215189 Rattus norvegicus cDNA, 3' end /clone=RKIBR14 /clone_end=3' /gb=AI169347 /gi=3705655 /len=604 Length = 604 Score = 69.9 bits (35), Expect = 9e-12 Identities = 77/91 (84%), Positives = 77/91 (84%) Query: 79 agtacacatggacaggcccaaggctccagctgcatatgtggcaaaggatggctttgctgg 138 |||||||||||| | |||| ||||||||| |||||||| |||||||||||| || | Sbjct: 195 agtacacatggagggacccatggctccagcggcatatgtagcaaaggatggccttatctg 254 Query: 139 gcaccaatgggaggaaaagcccttggtcctg 169 |||||| |||||||| | ||||||||||||| Sbjct: 255 gcaccagtgggaggagaggcccttggtcctg 285 >gnl|UG|Rn.34325 EST229189 Rattus norvegicus cDNA, 3' end /clone=RKICC48 /clone_end=3' /gb=AI232501 /gi=3816381 /len=297 Length = 297 Score = 67.9 bits (34), Expect = 3e-11 Identities = 52/58 (89%), Positives = 52/58 (89%) Query: 73 ccaaagagtacacatggacaggcccaaggctccagctgcatatgtggcaaaggatggc 130 |||||||||||||||||| | |||| |||||||||||||||||| ||| |||||||| Sbjct: 278 ccaaagagtacacatggagggacccatggctccagctgcatatgtagcagaggatggc 221 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4527 Number of Sequences: 23003 Number of extensions: 4527 Number of successful extensions: 350 Number of sequences better than 10: 20 length of query: 629 length of database: 15818664 effective HSP length: 17 effective length of query: 612 effective length of database: 15427613 effective search space: 9441699156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)