BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D4Rat112
         (486 letters)

Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq
           23,003 sequences; 15,818,664 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Rn.11041 Rattus norvegicus EF-hand Ca2+-binding protein ...   167  4e-41
gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,18...    44  4e-04
gnl|UG|Rn.11025 Rattus norvegicus calcium-dependent tyrosine ki...    36  0.093
gnl|UG|Rn.33593 UI-R-C2p-ob-b-07-0-UI.s1 Rattus norvegicus cDNA...    36  0.093
gnl|UG|Rn.12772 UI-R-C0-hv-d-07-0-UI.s1 Rattus norvegicus cDNA,...    34  0.37

>gnl|UG|Rn.11041 Rattus norvegicus EF-hand Ca2+-binding protein p22
            mRNA, complete cds /cds=(381,968) /gb=U39875 /gi=1226241
            /len=1411
            Length = 1411
            
 Score =  167 bits (84), Expect = 4e-41
 Identities = 84/84 (100%), Positives = 84/84 (100%)

                                                                        
Query: 368  tttgctggctggttcttgacatgagtccctgtttctttcctcagacaggacggatgcgtg 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tttgctggctggttcttgacatgagtccctgtttctttcctcagacaggacggatgcgtg 1235

                                    
Query: 428  gcactgagcagtagaacaggggaa 451
            ||||||||||||||||||||||||
Sbjct: 1234 gcactgagcagtagaacaggggaa 1211


>gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,1869)
            /gb=M58040 /gi=207463 /len=3413
            Length = 3413
            
 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%), Positives = 22/22 (100%)

                                  
Query: 1    aggtcgactctagaggatcccc 22
            ||||||||||||||||||||||
Sbjct: 2721 aggtcgactctagaggatcccc 2742


 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%), Positives = 22/22 (100%)

                                  
Query: 1    aggtcgactctagaggatcccc 22
            ||||||||||||||||||||||
Sbjct: 2664 aggtcgactctagaggatcccc 2643


>gnl|UG|Rn.11025 Rattus norvegicus calcium-dependent tyrosine kinase
            mRNA, complete cds /cds=(3,3032) /gb=U69109 /gi=1654376
            /len=3315
            Length = 3315
            
 Score = 36.2 bits (18), Expect = 0.093
 Identities = 18/18 (100%), Positives = 18/18 (100%)

                              
Query: 96   gcctcctgaggagtatgt 113
            ||||||||||||||||||
Sbjct: 2706 gcctcctgaggagtatgt 2723


>gnl|UG|Rn.33593 UI-R-C2p-ob-b-07-0-UI.s1 Rattus norvegicus cDNA, 3'
           end /clone=UI-R-C2p-ob-b-07-0-UI /clone_end=3'
           /gb=AI136595 /gi=3637372 /len=381
           Length = 381
           
 Score = 36.2 bits (18), Expect = 0.093
 Identities = 18/18 (100%), Positives = 18/18 (100%)

                             
Query: 342 aaacaaataaaacaaaaa 359
           ||||||||||||||||||
Sbjct: 86  aaacaaataaaacaaaaa 69


>gnl|UG|Rn.12772 UI-R-C0-hv-d-07-0-UI.s1 Rattus norvegicus cDNA, 3'
           end /clone=UI-R-C0-hv-d-07-0-UI /clone_end=3'
           /gb=AA997793 /gi=3188444 /len=436
           Length = 436
           
 Score = 34.2 bits (17), Expect = 0.37
 Identities = 17/17 (100%), Positives = 17/17 (100%)

                            
Query: 350 aaaacaaaaattttaaa 366
           |||||||||||||||||
Sbjct: 48  aaaacaaaaattttaaa 64


  Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq
    Posted date:  Feb 19, 1999  3:28 AM
  Number of letters in database: 15,818,664
  Number of sequences in database:  23,003
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3469
Number of Sequences: 23003
Number of extensions: 3469
Number of successful extensions: 1087
Number of sequences better than 10: 17
length of query: 486
length of database: 15818664
effective HSP length: 17
effective length of query: 469
effective length of database: 15427613
effective search space: 7235550497
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 15 (30.2 bits)