BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D3Rat52 (737 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 168 1e-41 gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone... 163 9e-40 gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,18... 76 2e-13 gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LG... 48 4e-05 gnl|UG|Rn.11096 Rattus norvegicus cell cycle progression relate... 48 4e-05 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 168 bits (85), Expect = 1e-41 Identities = 97/100 (97%), Positives = 97/100 (97%), Gaps = 1/100 (1%) Query: 484 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 388 Query: 544 acatacgagccggaagcataaagtg-tanagcctggggtg 582 |||||||| |||||||||||||||| || ||||||||||| Sbjct: 389 acatacgaaccggaagcataaagtgttaaagcctggggtg 428 >gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone=RBRAS22 /clone_end=3' /gb=AI007614 /gi=3221446 /len=522 Length = 522 Score = 163 bits (82), Expect = 9e-40 Identities = 89/90 (98%), Positives = 89/90 (98%), Gaps = 1/90 (1%) Query: 480 aattcgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattcca 539 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 aattcgtaatcatg-tcatagctgtttcctgtgtgaaattgttatccgctcacaattcca 492 Query: 540 cacaacatacgagccggaagcataaagtgt 569 |||||||||||||||||||||||||||||| Sbjct: 493 cacaacatacgagccggaagcataaagtgt 522 >gnl|UG|Rn.9961 Rat transferrin receptor mRNA, 3' end /cds=(0,1869) /gb=M58040 /gi=207463 /len=3413 Length = 3413 Score = 65.9 bits (33), Expect = 2e-10 Identities = 33/33 (100%), Positives = 33/33 (100%) Query: 9 tgcatgcctgcaggtcgactctagaggatcccc 41 ||||||||||||||||||||||||||||||||| Sbjct: 2710 tgcatgcctgcaggtcgactctagaggatcccc 2742 Score = 75.8 bits (38), Expect = 2e-13 Identities = 38/38 (100%), Positives = 38/38 (100%) Query: 4 aagcttgcatgcctgcaggtcgactctagaggatcccc 41 |||||||||||||||||||||||||||||||||||||| Sbjct: 2680 aagcttgcatgcctgcaggtcgactctagaggatcccc 2643 >gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LGR4 (LGR4) mRNA, complete cds /cds=(43,2898) /gb=AF061443 /gi=3885469 /len=3559 Length = 3559 Score = 48.1 bits (24), Expect = 4e-05 Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 466 gggtaccgagctcgaattcgtaat 489 |||||||||||||||||||||||| Sbjct: 3536 gggtaccgagctcgaattcgtaat 3559 >gnl|UG|Rn.11096 Rattus norvegicus cell cycle progression related D123 mRNA, complete cds /cds=(53,1063) /gb=U34843 /gi=1236113 /len=1683 Length = 1683 Score = 48.1 bits (24), Expect = 4e-05 Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 4 aagcttgcatgcctgcaggtcgac 27 |||||||||||||||||||||||| Sbjct: 1683 aagcttgcatgcctgcaggtcgac 1660 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3935 Number of Sequences: 23003 Number of extensions: 3935 Number of successful extensions: 239 Number of sequences better than 10: 13 length of query: 737 length of database: 15818664 effective HSP length: 17 effective length of query: 720 effective length of database: 15427613 effective search space: 11107881360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)