BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D3Rat20 (670 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.17803 EST206551 Rattus norvegicus cDNA, 3' end /clone... 208 2e-53 gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 178 1e-44 gnl|UG|Rn.6831 EST194646 Rattus norvegicus cDNA, 3' end /clone=... 174 2e-43 gnl|UG|Rn.10158 Rattus norvegicus surface protein MCA-32 (MCA-3... 172 9e-43 gnl|UG|Rn.32813 UI-R-E1-fb-g-11-0-UI.s1 Rattus norvegicus cDNA,... 165 2e-40 >gnl|UG|Rn.17803 EST206551 Rattus norvegicus cDNA, 3' end /clone=RPLAS73 /clone_end=3' /gb=AI012100 /gi=3225932 /len=559 Length = 559 Score = 208 bits (105), Expect = 2e-53 Identities = 139/149 (93%), Positives = 139/149 (93%), Gaps = 1/149 (0%) Query: 152 gggctggagagatggctcagcagttaagagcattgactgctcttccagaggtcctgagtt 211 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 215 gggctggagagatggctcagcagttaagagcactgactgctcttccagaggtcctgagtt 156 Query: 212 caattcccagccaccacatggtgg-tcacaactatcaataatgggatccgatgccctctt 270 ||||||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||| Sbjct: 155 caattcccagcaaccacatggtggctcacaactatctgtaatgggatccaatgccctctt 96 Query: 271 ctggtgtgtccaaagacaattacagtgta 299 |||||||||| |||||| ||||||||| Sbjct: 95 ctggtgtgtctgaagacagctacagtgta 67 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 178 bits (90), Expect = 1e-44 Identities = 100/102 (98%), Positives = 100/102 (98%), Gaps = 1/102 (0%) Query: 393 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 388 Query: 453 acatacgagccggaagcataaagtg-taaagcctggggtgcc 493 |||||||| |||||||||||||||| |||||||||||||||| Sbjct: 389 acatacgaaccggaagcataaagtgttaaagcctggggtgcc 430 >gnl|UG|Rn.6831 EST194646 Rattus norvegicus cDNA, 3' end /clone=RSPAN80 /clone_end=3' /gb=AA851877 /gi=2939417 /len=503 Length = 503 Score = 174 bits (88), Expect = 2e-43 Identities = 140/156 (89%), Positives = 140/156 (89%), Gaps = 1/156 (0%) Query: 150 gggggctggagagatggctcagcagttaagagcattgactgctcttccagaggtcctgag 209 |||| |||||||||||||||||| |||||||||| |||||| ||||||||||| |||||| Sbjct: 178 ggggtctggagagatggctcagcggttaagagcactgactgttcttccagagggcctgag 119 Query: 210 ttcaattcccagccaccacatggtgg-tcacaactatcaataatgggatccgatgccctc 268 |||||||| |||| |||||||||||| ||||||| ||| |||||||||||||||||||| Sbjct: 118 ttcaattctcagcaaccacatggtggctcacaaccatctgtaatgggatccgatgccctc 59 Query: 269 ttctggtgtgtccaaagacaattacagtgtattcat 304 |||||||||||| |||||| | |||||||| |||| Sbjct: 58 ttctggtgtgtctgaagacagtgacagtgtactcat 23 >gnl|UG|Rn.10158 Rattus norvegicus surface protein MCA-32 (MCA-32) mRNA, complete cds /cds=(21,827) /gb=U39546 /gi=1136500 /len=1659 Length = 1659 Score = 34.2 bits (17), Expect = 0.51 Identities = 29/33 (87%), Positives = 29/33 (87%) Query: 151 ggggctggagagatggctcagcagttaagagca 183 ||||||| ||| ||||||||||| |||||||| Sbjct: 1197 ggggctgcagaagtggctcagcagctaagagca 1229 Score = 172 bits (87), Expect = 9e-43 Identities = 121/131 (92%), Positives = 121/131 (92%), Gaps = 1/131 (0%) Query: 151 ggggctggagagatggctcagcagttaagagcattgactgctcttccagaggtcctgagt 210 ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct: 1393 ggggctggagagatggctcagtggttaagagcactgactgctcttccagaggtcctgagt 1452 Query: 211 tcaattcccagccaccacatggtgg-tcacaactatcaataatgggatccgatgccctct 269 ||||| |||||| |||||||||||| |||||| ||| |||||||||||||||||||||| Sbjct: 1453 tcaatacccagcaaccacatggtggctcacaaacatctataatgggatccgatgccctct 1512 Query: 270 tctggtgtgtc 280 |||| |||||| Sbjct: 1513 tctgctgtgtc 1523 >gnl|UG|Rn.32813 UI-R-E1-fb-g-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-E1-fb-g-11-0-UI /clone_end=3' /gb=AA956000 /gi=3119695 /len=392 Length = 392 Score = 165 bits (83), Expect = 2e-40 Identities = 118/127 (92%), Positives = 118/127 (92%), Gaps = 2/127 (1%) Query: 153 ggctggagagatggctcagcagttaagagcatt-gactgctcttccagaggtcctgagtt 211 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 200 ggctggagagatggctcagcagttaagagcacccgactgctcttccagaggtcctgagtt 141 Query: 212 caattcccagccaccacatggtgg-tcacaactatcaataatgggatccgatgccctctt 270 ||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||| Sbjct: 140 caattcccagcaaccacatggtggctcacaaccatctgtaatgggatctgatgccctctt 81 Query: 271 ctggtgt 277 ||||||| Sbjct: 80 ctggtgt 74 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5502 Number of Sequences: 23003 Number of extensions: 5502 Number of successful extensions: 944 Number of sequences better than 10: 310 length of query: 670 length of database: 15818664 effective HSP length: 17 effective length of query: 653 effective length of database: 15427613 effective search space: 10074231289 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)