BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D2Rat8 (846 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.21903 UI-R-C2-my-d-11-0-UI.s1 Rattus norvegicus cDNA,... 111 3e-24 gnl|UG|Rn.1055 Rattus norvegicus soluble cytochrome b5 mRNA, co... 111 3e-24 gnl|UG|Rn.7835 EST200604 Rattus norvegicus cDNA, 3' end /clone=... 74 8e-13 gnl|UG|Rn.22898 EST222595 Rattus norvegicus cDNA, 3' end /clone... 68 5e-11 gnl|UG|Rn.33233 EST207060 Rattus norvegicus cDNA, 3' end /clone... 56 2e-07 >gnl|UG|Rn.21903 UI-R-C2-my-d-11-0-UI.s1 Rattus norvegicus cDNA, 3' end /clone=UI-R-C2-my-d-11-0-UI /clone_end=3' /gb=AI071210 /gi=3397425 /len=491 Length = 491 Score = 111 bits (56), Expect = 3e-24 Identities = 119/140 (85%), Positives = 119/140 (85%) Query: 220 tggttctgttgattctttctatggtccttttggtttctctttggttgatttcagctctga 279 ||||| |||||| ||||||||| || ||||| |||||| || |||||||||||| |||| Sbjct: 281 tggttttgttgactctttctatagttctttttgtttctacttcgttgatttcagccctga 222 Query: 280 gtttgataatttcctgccttctactccttctgggtgtatttgcttctttttgttctagag 339 | ||||| ||||||||| ||| ||||| | |||||||||| ||||||||||||||||| Sbjct: 221 gattgattatttcctgctgtctgctcctcttaggtgtatttgtttctttttgttctagag 162 Query: 340 ctttgaggtgtgctgtcaag 359 | || ||| ||||||||||| Sbjct: 161 cgtttaggagtgctgtcaag 142 Score = 73.8 bits (37), Expect = 8e-13 Identities = 58/65 (89%), Positives = 58/65 (89%) Query: 396 gcactcagagctatgagttttcctcttagcacagctttcattgtgtcccataagtttggg 455 ||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| || Sbjct: 106 gcactcagagccgtgagctttcctcttagcactgctttcattgtgtcctgtaagtttagg 47 Query: 456 tatgt 460 ||||| Sbjct: 46 tatgt 42 Score = 44.1 bits (22), Expect = 7e-04 Identities = 31/34 (91%), Positives = 31/34 (91%) Query: 160 ctctcgttagtctggctaagggtttatctatctt 193 |||| |||||| || ||||||||||||||||||| Sbjct: 350 ctctggttagtgtgactaagggtttatctatctt 317 >gnl|UG|Rn.1055 Rattus norvegicus soluble cytochrome b5 mRNA, complete cds /cds=(30,332) /gb=AF007107 /gi=2257954 /len=520 Length = 520 Score = 111 bits (56), Expect = 3e-24 Identities = 59/60 (98%), Positives = 59/60 (98%) Query: 396 gcactcagagctatgagttttcctcttagcacagctttcattgtgtcccataagtttggg 455 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gcactcagcgctatgagttttcctcttagcacagctttcattgtgtcccataagtttggg 377 >gnl|UG|Rn.7835 EST200604 Rattus norvegicus cDNA, 3' end /clone=RLIAG56 /clone_end=3' /gb=AA945105 /gi=3105021 /len=627 Length = 627 Score = 73.8 bits (37), Expect = 8e-13 Identities = 43/45 (95%), Positives = 43/45 (95%) Query: 396 gcactcagagctatgagttttcctcttagcacagctttcattgtg 440 |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 604 gcactcagctctatgagttttcctcttagcacagctttcattgtg 560 >gnl|UG|Rn.22898 EST222595 Rattus norvegicus cDNA, 3' end /clone=RSPBT18 /clone_end=3' /gb=AI178913 /gi=3729551 /len=640 Length = 640 Score = 67.9 bits (34), Expect = 5e-11 Identities = 34/34 (100%), Positives = 34/34 (100%) Query: 422 tagcacagctttcattgtgtcccataagtttggg 455 |||||||||||||||||||||||||||||||||| Sbjct: 640 tagcacagctttcattgtgtcccataagtttggg 607 >gnl|UG|Rn.33233 EST207060 Rattus norvegicus cDNA, 3' end /clone=RPLAZ50 /clone_end=3' /gb=AI012609 /gi=3226441 /len=579 Length = 579 Score = 56.0 bits (28), Expect = 2e-07 Identities = 107/132 (81%), Positives = 107/132 (81%), Gaps = 1/132 (0%) Query: 326 tttttgttctagagctttgaggtgtgctgtcaagctacggacatatgctctctcttgttt 385 ||||| |||||||||||| | ||||||||||||||| | |||||||| || |||| Sbjct: 15 ttttttttctagagctttcatgtgtgctgtcaagctgctagtgtatgctctttccggttt 74 Query: 386 ctttctgccagcactcagagctatgagttttcctcttagcacagctttcattgtgtccca 445 |||| || | |||| || || ||| ||||||||| ||||| || ||| |||||||||| Sbjct: 75 ctttttggagggactccgaactgtgaattttcctctcagcaccgc-ttccttgtgtccca 133 Query: 446 taagtttgggta 457 |||||||||||| Sbjct: 134 taagtttgggta 145 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5723 Number of Sequences: 23003 Number of extensions: 5723 Number of successful extensions: 476 Number of sequences better than 10: 23 length of query: 846 length of database: 15818664 effective HSP length: 17 effective length of query: 829 effective length of database: 15427613 effective search space: 12789491177 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)