BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D1Rat232 (549 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 101 2e-21 gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone... 88 3e-17 gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LG... 36 0.11 gnl|UG|Rn.9041 EST225754 Rattus norvegicus cDNA, 3' end /clone=... 34 0.42 gnl|UG|Rn.10344 R.norvegicus mRNA for connexin 30.3 /cds=(777,1... 34 0.42 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 101 bits (51), Expect = 2e-21 Identities = 84/95 (88%), Positives = 84/95 (88%), Gaps = 2/95 (2%) Query: 291 atggtcatagctgtttccngtgnnna-ttgntatccnnncacaattccacacaacatacg 349 |||||||||||||||||| ||| | ||| ||||| ||||||||||||||||||||| Sbjct: 336 atggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacg 395 Query: 350 agccggaagcataaagtg-taaagcctggggtgcc 383 | |||||||||||||||| |||||||||||||||| Sbjct: 396 aaccggaagcataaagtgttaaagcctggggtgcc 430 >gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone=RBRAS22 /clone_end=3' /gb=AI007614 /gi=3221446 /len=522 Length = 522 Score = 87.7 bits (44), Expect = 3e-17 Identities = 67/76 (88%), Positives = 67/76 (88%), Gaps = 1/76 (1%) Query: 294 gtcatagctgtttccngtgnnna-ttgntatccnnncacaattccacacaacatacgagc 352 ||||||||||||||| ||| | ||| ||||| |||||||||||||||||||||||| Sbjct: 447 gtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacacaacatacgagc 506 Query: 353 cggaagcataaagtgt 368 |||||||||||||||| Sbjct: 507 cggaagcataaagtgt 522 >gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LGR4 (LGR4) mRNA, complete cds /cds=(43,2898) /gb=AF061443 /gi=3885469 /len=3559 Length = 3559 Score = 36.2 bits (18), Expect = 0.11 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 265 gggtaccgagctcgaatncgt 285 ||||||||||||||||| ||| Sbjct: 3536 gggtaccgagctcgaattcgt 3556 >gnl|UG|Rn.9041 EST225754 Rattus norvegicus cDNA, 3' end /clone=RBRDD46 /clone_end=3' /gb=AI229059 /gi=3812946 /len=503 Length = 503 Score = 34.2 bits (17), Expect = 0.42 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 51 cagactctgcctttgtt 67 ||||||||||||||||| Sbjct: 165 cagactctgcctttgtt 149 >gnl|UG|Rn.10344 R.norvegicus mRNA for connexin 30.3 /cds=(777,1574) /gb=X76168 /gi=431203 /len=2855 Length = 2855 Score = 34.2 bits (17), Expect = 0.42 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 129 tcagatccaccctccat 145 ||||||||||||||||| Sbjct: 2722 tcagatccaccctccat 2738 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3012 Number of Sequences: 23003 Number of extensions: 3012 Number of successful extensions: 205 Number of sequences better than 10: 5 length of query: 549 length of database: 15818664 effective HSP length: 17 effective length of query: 532 effective length of database: 15427613 effective search space: 8207490116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)