BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D14Rat19 (561 letters) Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq 23,003 sequences; 15,818,664 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Rn.9738 R.norvegicus gene for phosphoglyceromutase /cds=... 391 e-108 gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone... 119 9e-27 gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15... 119 9e-27 gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LG... 48 3e-05 gnl|UG|Rn.9836 Rat O-6-alkylguanine-DNA-alkyltransferase mRNA /... 42 0.002 >gnl|UG|Rn.9738 R.norvegicus gene for phosphoglyceromutase /cds=(1181,1942) /gb=Z17319 /gi=297110 /len=2126 Length = 2126 Score = 262 bits (132), Expect = 1e-69 Identities = 135/136 (99%), Positives = 135/136 (99%) Query: 273 ctcagcaataggctaaatttcttcctgagacatgtttgtggttgtcttaattgtgttaag 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 654 ctcagcaataggctaaatttcttcctgagacatgtttgtggttgtcttaattgtgttaag 713 Query: 333 aggctgaagggagaggctgcagcttgggtcacacgtttaaaccctgtctttaagtatatg 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 714 aggctgaagggagaggctgcagcttgggtcacacgtttaaaccctgtctttaagtatatg 773 Query: 393 tatatatcagaaatgg 408 ||||||| |||||||| Sbjct: 774 tatatatgagaaatgg 789 Score = 391 bits (197), Expect = e-108 Identities = 217/221 (98%), Positives = 217/221 (98%), Gaps = 2/221 (0%) Query: 16 cctccaacctaaaaagttctctactaagttgagcacggcaacgccaattagtggggtggg 75 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 405 cctccaacctaaaaagttctctactaagttgagcacggcaatgccaattagtggggtggg 464 Query: 76 ggtgggagtatcctcgtggtaaaagcgtgtgctccttccctgtttaaccaa-cccag-ca 133 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct: 465 ggtgggagtatcctcgtggtaaaagcgtgtgctccttccctgtttaaccaaccccagtca 524 Query: 134 acacagacaatgcatggatactgagataggcacctgggcagggaatagtcatctgttgca 193 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 525 acacagacaatgcatggatactgagacaggcacctgggcagggaatagtcatctgttgca 584 Query: 194 gacacacctatttatttatgcatgcactgacctctttgtgt 234 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 gacacacctatttatttatgcatgcactgacctctttgtgt 625 >gnl|UG|Rn.33261 EST202065 Rattus norvegicus cDNA, 3' end /clone=RBRAS22 /clone_end=3' /gb=AI007614 /gi=3221446 /len=522 Length = 522 Score = 119 bits (60), Expect = 9e-27 Identities = 86/91 (94%), Positives = 86/91 (94%), Gaps = 3/91 (3%) Query: 422 aattcgtaatcatggtcatagc-gtttcctgtgtgaaattgtnatccgctcacaattcca 480 |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct: 434 aattcgtaatcatg-tcatagctgtttcctgtgtgaaattgttatccgctcacaattcca 492 Query: 481 cacaacatatgagccgngaagcataaagtgt 511 ||||||||| |||||| |||||||||||||| Sbjct: 493 cacaacatacgagccg-gaagcataaagtgt 522 >gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=1503971 /len=441 Length = 441 Score = 119 bits (60), Expect = 9e-27 Identities = 82/87 (94%), Positives = 82/87 (94%), Gaps = 2/87 (2%) Query: 426 cgtaatcatggtcatagc-gtttcctgtgtgaaattgtnatccgctcacaattccacaca 484 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct: 329 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 388 Query: 485 acatatgagccgngaagcataaagtgt 511 ||||| || ||| |||||||||||||| Sbjct: 389 acatacgaaccg-gaagcataaagtgt 414 >gnl|UG|Rn.30054 Rattus norvegicus G protein-coupled receptor LGR4 (LGR4) mRNA, complete cds /cds=(43,2898) /gb=AF061443 /gi=3885469 /len=3559 Length = 3559 Score = 48.1 bits (24), Expect = 3e-05 Identities = 24/24 (100%), Positives = 24/24 (100%) Query: 408 gggtaccgagctcgaattcgtaat 431 |||||||||||||||||||||||| Sbjct: 3536 gggtaccgagctcgaattcgtaat 3559 >gnl|UG|Rn.9836 Rat O-6-alkylguanine-DNA-alkyltransferase mRNA /cds=(99,728) /gb=X54862 /gi=311908 /len=837 Length = 837 Score = 42.1 bits (21), Expect = 0.002 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 421 gaattcgtaatcatggtcata 441 ||||||||||||||||||||| Sbjct: 817 gaattcgtaatcatggtcata 837 Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq Posted date: Feb 19, 1999 3:28 AM Number of letters in database: 15,818,664 Number of sequences in database: 23,003 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5056 Number of Sequences: 23003 Number of extensions: 5056 Number of successful extensions: 523 Number of sequences better than 10: 27 length of query: 561 length of database: 15818664 effective HSP length: 17 effective length of query: 544 effective length of database: 15427613 effective search space: 8392621472 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)