BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D10Rat83
         (510 letters)

Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq
           23,003 sequences; 15,818,664 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Rn.3721 EST193430 Rattus norvegicus cDNA, 3' end /clone=...   234  2e-61
gnl|UG|Rn.24162 EST227257 Rattus norvegicus cDNA, 3' end /clone...   204  2e-52
gnl|UG|Rn.33978 EST221493 Rattus norvegicus cDNA, 3' end /clone...   186  4e-47
gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195 /gi=15...   165  2e-40
gnl|UG|Rn.34133 UI-R-A0-bc-a-08-0-UI.s1 Rattus norvegicus cDNA,...   107  3e-23

>gnl|UG|Rn.3721 EST193430 Rattus norvegicus cDNA, 3' end
           /clone=ROVAJ23 /clone_end=3' /gb=AA850662 /gi=2938202
           /len=548
           Length = 548
           
 Score =  234 bits (118), Expect = 2e-61
 Identities = 118/118 (100%), Positives = 118/118 (100%)

                                                                       
Query: 255 gaaaataaaagcatttaatatcttttaaactacttctgcacatacgtggacacactggta 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaaaataaaagcatttaatatcttttaaactacttctgcacatacgtggacacactggta 60

                                                                     
Query: 315 gggctttgggctgtgtgctgcttgcaggatgtgagtagatgaagcaggtactaggagg 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gggctttgggctgtgtgctgcttgcaggatgtgagtagatgaagcaggtactaggagg 118


>gnl|UG|Rn.24162 EST227257 Rattus norvegicus cDNA, 3' end
           /clone=REMCY14 /clone_end=3' /gb=AI230547 /gi=3814449
           /len=642
           Length = 642
           
 Score =  204 bits (103), Expect = 2e-52
 Identities = 103/103 (100%), Positives = 103/103 (100%)

                                                                       
Query: 131 cgcgcgtgtgcacgtgcacgtgtctggcagtgaggatgggcttccctgtagatgccacct 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 cgcgcgtgtgcacgtgcacgtgtctggcagtgaggatgggcttccctgtagatgccacct 51

                                                      
Query: 191 tcggcttttctcttttttaaaaaactagttgttttaatattaa 233
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50  tcggcttttctcttttttaaaaaactagttgttttaatattaa 8


 Score =  123 bits (62), Expect = 5e-28
 Identities = 62/62 (100%), Positives = 62/62 (100%)

                                                                       
Query: 34  cctgtgtgtatgcgcatgtgactggaaactgctgggcatcgtgactgaagttggtcatcg 93
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 cctgtgtgtatgcgcatgtgactggaaactgctgggcatcgtgactgaagttggtcatcg 150

             
Query: 94  gg 95
           ||
Sbjct: 149 gg 148


>gnl|UG|Rn.33978 EST221493 Rattus norvegicus cDNA, 3' end
           /clone=RPLCH30 /clone_end=3' /gb=AI177846 /gi=3728484
           /len=600
           Length = 600
           
 Score =  186 bits (94), Expect = 4e-47
 Identities = 94/94 (100%), Positives = 94/94 (100%)

                                                                       
Query: 140 gcacgtgcacgtgtctggcagtgaggatgggcttccctgtagatgccaccttcggctttt 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  gcacgtgcacgtgtctggcagtgaggatgggcttccctgtagatgccaccttcggctttt 39

                                             
Query: 200 ctcttttttaaaaaactagttgttttaatattaa 233
           ||||||||||||||||||||||||||||||||||
Sbjct: 38  ctcttttttaaaaaactagttgttttaatattaa 5


>gnl|UG|Rn.29927 C07195 Rattus norvegicus cDNA /gb=C07195
           /gi=1503971 /len=441
           Length = 441
           
 Score =  165 bits (83), Expect = 2e-40
 Identities = 98/102 (96%), Positives = 98/102 (96%), Gaps = 1/102 (0%)

                                                                       
Query: 391 cgtaatcatggtcatagctgtttccggtgtgaaattgttatccgctcacaattccacaca 450
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 329 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcacaattccacaca 388

                                                     
Query: 451 acatacgagccggaagcataaagtg-taaancctggggtgcc 491
           |||||||| |||||||||||||||| |||| |||||||||||
Sbjct: 389 acatacgaaccggaagcataaagtgttaaagcctggggtgcc 430


>gnl|UG|Rn.34133 UI-R-A0-bc-a-08-0-UI.s1 Rattus norvegicus cDNA, 3'
           end /clone=UI-R-A0-bc-a-08-0-UI /clone_end=3'
           /gb=AA819312 /gi=2889401 /len=513
           Length = 513
           
 Score =  107 bits (54), Expect = 3e-23
 Identities = 60/62 (96%), Positives = 60/62 (96%)

                                                                       
Query: 34  cctgtgtgtatgcgcatgtgactggaaactgctgggcatcgtgactgaagttggtcatcg 93
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 225 cctgtgtgtatgcgcatgtgactggaaaatgctgggcattgtgactgaagttggtcatcg 166

             
Query: 94  gg 95
           ||
Sbjct: 165 gg 164


 Score = 83.8 bits (42), Expect = 5e-16
 Identities = 81/94 (86%), Positives = 81/94 (86%)

                                                                       
Query: 140 gcacgtgcacgtgtctggcagtgaggatgggcttccctgtagatgccaccttcggctttt 199
           ||||||||| |||| |||| ||| || |||| |||||||| ||| || ||||||| ||||
Sbjct: 127 gcacgtgcaagtgtttggccgtgggggtggggttccctgttgattcccccttcgggtttt 68

                                             
Query: 200 ctcttttttaaaaaactagttgttttaatattaa 233
            |||||||||||||||| ||||||||||| ||||
Sbjct: 67  ttcttttttaaaaaacttgttgttttaattttaa 34


  Database: /ddhome/DDsys/GenDB/UniGeneRn/Rn.seq.uniq
    Posted date:  Feb 19, 1999  3:28 AM
  Number of letters in database: 15,818,664
  Number of sequences in database:  23,003
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5598
Number of Sequences: 23003
Number of extensions: 5598
Number of successful extensions: 511
Number of sequences better than 10: 25
length of query: 510
length of database: 15818664
effective HSP length: 17
effective length of query: 493
effective length of database: 15427613
effective search space: 7605813209
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 15 (30.2 bits)