BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= st001f08 (357 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953)... 95 1e-19 gnl|UG|Mm.26358 AU023004 Mus musculus cDNA, 3' end /clone=J0423... 49 1e-05 gnl|UG|Mm.28754 AU023050 Mus musculus cDNA, 3' end /clone=J0425... 47 4e-05 gnl|UG|Mm.12270 AU045746 Mus musculus cDNA, 3' end /clone=J0940... 39 0.011 gnl|UG|Mm.25780 ub05g03.r1 Mus musculus cDNA, 5' end /clone=IMA... 31 3.0 >gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953) /gb=X52634 /gi=53528 /len=1425 Length = 1425 Score = 95.2 bits (47), Expect = 1e-19 Identities = 151/186 (81%), Positives = 151/186 (81%), Gaps = 6/186 (3%) Query: 7 tgactggtgtgagggggaacctcagggttggtttgatttgcacttctctgataactaagg 66 ||||||||||||| |||| |||||||||| ||||||||||| ||| ||||| ||||||| Sbjct: 818 tgactggtgtgagatggaatctcagggttgttttgatttgcatttccctgatgactaagg 877 Query: 67 atgttattnntttaggtgcttctgagccattcgatattcctcagtttagaattctttgtt 126 |||| |||| ||||||| |||||||||| ||||||||||| | ||| ||||||| Sbjct: 878 atgt-----ctttaactgcttctcagccattcgagattcctcagttgataatcctttgtt 932 Query: 127 ttg-tttggaacccagttttaaataggattatttdattctbttgagtctagcttcttgag 185 | | | || | |||| ||||||||||| |||||| |||| | ||| | | |||||||| Sbjct: 933 tagctctgtaccccatttttaaatagggttatttggttctctggaggcaaccttcttgac 992 Query: 186 ttcttt 191 |||||| Sbjct: 993 ttcttt 998 >gnl|UG|Mm.26358 AU023004 Mus musculus cDNA, 3' end /clone=J0423H09 /clone_end=3' /gb=AU023004 /gi=3393351 /len=546 Length = 546 Score = 48.9 bits (24), Expect = 1e-05 Identities = 42/48 (87%), Positives = 42/48 (87%) Query: 16 tgagggggaacctcagggttggtttgatttgcacttctctgataacta 63 ||||| |||| |||||||||| ||||||||||| || |||||||||| Sbjct: 374 tgaggtggaatctcagggttgttttgatttgcattttcctgataacta 327 >gnl|UG|Mm.28754 AU023050 Mus musculus cDNA, 3' end /clone=J0425A10 /clone_end=3' /gb=AU023050 /gi=3393397 /len=589 Length = 589 Score = 46.9 bits (23), Expect = 4e-05 Identities = 27/29 (93%), Positives = 27/29 (93%) Query: 169 gagtctagcttcttgagttctttstatat 197 ||||| ||||||||||||||||| ||||| Sbjct: 43 gagtccagcttcttgagttctttgtatat 71 >gnl|UG|Mm.12270 AU045746 Mus musculus cDNA, 3' end /clone=J0940F11 /clone_end=3' /gb=AU045746 /gi=3981929 /len=454 Length = 454 Score = 38.8 bits (19), Expect = 0.011 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 234 aaagatcaggaattcaggc 252 ||||||||||||||||||| Sbjct: 351 aaagatcaggaattcaggc 333 >gnl|UG|Mm.25780 ub05g03.r1 Mus musculus cDNA, 5' end /clone=IMAGE:1366132 /clone_end=5' /gb=AI020864 /gi=3235200 /len=494 Length = 494 Score = 30.7 bits (15), Expect = 3.0 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 32 ggttggtttgatttg 46 ||||||||||||||| Sbjct: 326 ggttggtttgatttg 340 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.40 0.714 1.32 Gapped Lambda K H 1.40 0.714 1.32 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2881 Number of Sequences: 15275 Number of extensions: 2881 Number of successful extensions: 1127 Number of sequences better than 10: 24 length of query: 357 length of database: 15836343 effective HSP length: 16 effective length of query: 341 effective length of database: 15591943 effective search space: 5316852563 T: 0 A: 0 X1: 5 (10.1 bits) X2: 24 (48.4 bits) S1: 0 ( 0.5 bits) S2: 15 (30.7 bits)