BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= r00933 (468 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.19590 AU015722 Mus musculus cDNA, 3' end /clone=J0715... 151 2e-36 gnl|UG|Mm.25986 AU016456 Mus musculus cDNA, 3' end /clone=J0725... 151 2e-36 gnl|UG|Mm.26007 AU016817 Mus musculus cDNA, 3' end /clone=J0730... 151 2e-36 gnl|UG|Mm.25974 AU016313 Mus musculus cDNA, 3' end /clone=J0723... 151 2e-36 gnl|UG|Mm.28267 AU016586 Mus musculus cDNA, 3' end /clone=J0727... 151 2e-36 >gnl|UG|Mm.19590 AU015722 Mus musculus cDNA, 3' end /clone=J0715E08 /clone_end=3' /gb=AU015722 /gi=3370513 /len=554 Length = 554 Score = 151 bits (76), Expect = 2e-36 Identities = 111/121 (91%), Positives = 111/121 (91%), Gaps = 3/121 (2%) Query: 348 tgtactggctagttttgtgtgtcaacttgacacaagctggagttatcacagagaaaggag 407 |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 326 tgtattggctagttttgtgt--caacttgacaca-gctggagttatcacagagaaaggag 270 Query: 408 cntcagttgaggaaaagcntccatgagacccaactgtaaggcattttctcaactaatgat 467 | ||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| Sbjct: 269 cttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgat 210 Query: 468 c 468 | Sbjct: 209 c 209 >gnl|UG|Mm.25986 AU016456 Mus musculus cDNA, 3' end /clone=J0725D10 /clone_end=3' /gb=AU016456 /gi=3371460 /len=570 Length = 570 Score = 151 bits (76), Expect = 2e-36 Identities = 111/121 (91%), Positives = 111/121 (91%), Gaps = 3/121 (2%) Query: 348 tgtactggctagttttgtgtgtcaacttgacacaagctggagttatcacagagaaaggag 407 |||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| Sbjct: 340 tgtactggctagttttgtgt--caacttggcaca-gctggagttatcacagagaaaggag 284 Query: 408 cntcagttgaggaaaagcntccatgagacccaactgtaaggcattttctcaactaatgat 467 | ||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| Sbjct: 283 cttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgat 224 Query: 468 c 468 | Sbjct: 223 c 223 Score = 32.2 bits (16), Expect = 1.4 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 360 ttttgtgtgtcaacttgaca 379 ||||||||||||| |||||| Sbjct: 370 ttttgtgtgtcaagttgaca 351 >gnl|UG|Mm.26007 AU016817 Mus musculus cDNA, 3' end /clone=J0730C06 /clone_end=3' /gb=AU016817 /gi=3371821 /len=579 Length = 579 Score = 151 bits (76), Expect = 2e-36 Identities = 111/121 (91%), Positives = 111/121 (91%), Gaps = 3/121 (2%) Query: 348 tgtactggctagttttgtgtgtcaacttgacacaagctggagttatcacagagaaaggag 407 |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 331 tgtattggctagttttgtgt--caacttgacaca-gctggagttatcacagagaaaggag 275 Query: 408 cntcagttgaggaaaagcntccatgagacccaactgtaaggcattttctcaactaatgat 467 | ||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| Sbjct: 274 cttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgat 215 Query: 468 c 468 | Sbjct: 214 c 214 >gnl|UG|Mm.25974 AU016313 Mus musculus cDNA, 3' end /clone=J0723D07 /clone_end=3' /gb=AU016313 /gi=3371317 /len=580 Length = 580 Score = 151 bits (76), Expect = 2e-36 Identities = 111/121 (91%), Positives = 111/121 (91%), Gaps = 3/121 (2%) Query: 348 tgtactggctagttttgtgtgtcaacttgacacaagctggagttatcacagagaaaggag 407 |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| Sbjct: 343 tgtactggctagttttgtgt--caacttgacaca-gctggagttaccacagagaaaggag 287 Query: 408 cntcagttgaggaaaagcntccatgagacccaactgtaaggcattttctcaactaatgat 467 | ||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| Sbjct: 286 cttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgat 227 Query: 468 c 468 | Sbjct: 226 c 226 >gnl|UG|Mm.28267 AU016586 Mus musculus cDNA, 3' end /clone=J0727A11 /clone_end=3' /gb=AU016586 /gi=3371590 /len=453 Length = 453 Score = 151 bits (76), Expect = 2e-36 Identities = 111/121 (91%), Positives = 111/121 (91%), Gaps = 3/121 (2%) Query: 348 tgtactggctagttttgtgtgtcaacttgacacaagctggagttatcacagagaaaggag 407 |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| Sbjct: 342 tgtactggctagttttgtgt--caacttgacaca-gctggagttaccacagagaaaggag 286 Query: 408 cntcagttgaggaaaagcntccatgagacccaactgtaaggcattttctcaactaatgat 467 | ||||||||||||| || ||||||||| ||||||||||||||||||||||| || |||| Sbjct: 285 cttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgat 226 Query: 468 c 468 | Sbjct: 225 c 225 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3767 Number of Sequences: 15275 Number of extensions: 3767 Number of successful extensions: 1440 Number of sequences better than 10: 100 length of query: 468 length of database: 15836343 effective HSP length: 17 effective length of query: 451 effective length of database: 15576668 effective search space: 7025077268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)