BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 898d09 (417 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.4907 Nucleolin /cds=(0,2123) /gb=X07699 /gi=53453 /le... 98 3e-20 gnl|UG|Mm.28494 C88494 Mus musculus cDNA /clone=00B006380X00 /g... 36 0.081 gnl|UG|Mm.26414 AU024213 Mus musculus cDNA, 3' end /clone=J0448... 36 0.081 gnl|UG|Mm.16710 Importin beta /cds=(35,2665) /gb=D67015 /gi=166... 34 0.32 gnl|UG|Mm.931 Interleukin 2 receptor, beta chain /cds=(106,1725... 34 0.32 >gnl|UG|Mm.4907 Nucleolin /cds=(0,2123) /gb=X07699 /gi=53453 /len=2124 Length = 2124 Score = 97.6 bits (49), Expect = 3e-20 Identities = 67/73 (91%), Positives = 67/73 (91%) Query: 118 ctattcaaacttcatcttctttccttgtggctcaaagtctcccctccctcctctgctgcc 177 ||||||||||||| |||||||||||||||||| |||||||||| |||||||||| ||| Sbjct: 2124 ctattcaaacttcgtcttctttccttgtggcttgaagtctccccctcctcctctgccgcc 2065 Query: 178 tcggaagcctcct 190 ||||||||||||| Sbjct: 2064 tcggaagcctcct 2052 >gnl|UG|Mm.28494 C88494 Mus musculus cDNA /clone=00B006380X00 /gb=C88494 /gi=3164256 /len=749 Length = 749 Score = 36.2 bits (18), Expect = 0.081 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 199 ctgccaaatctgcctctt 216 |||||||||||||||||| Sbjct: 556 ctgccaaatctgcctctt 539 >gnl|UG|Mm.26414 AU024213 Mus musculus cDNA, 3' end /clone=J0448G06 /clone_end=3' /gb=AU024213 /gi=3394560 /len=595 Length = 595 Score = 36.2 bits (18), Expect = 0.081 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 206 atctgcctcttctacctc 223 |||||||||||||||||| Sbjct: 170 atctgcctcttctacctc 153 >gnl|UG|Mm.16710 Importin beta /cds=(35,2665) /gb=D67015 /gi=1669534 /len=5586 Length = 5586 Score = 34.2 bits (17), Expect = 0.32 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 168 ctctgctgcctcggaagcctc 188 |||||||||||| |||||||| Sbjct: 941 ctctgctgcctctgaagcctc 921 >gnl|UG|Mm.931 Interleukin 2 receptor, beta chain /cds=(106,1725) /gb=M28052 /gi=198313 /len=2038 Length = 2038 Score = 34.2 bits (17), Expect = 0.32 Identities = 23/25 (92%), Positives = 23/25 (92%) Query: 155 tctcccctccctcctctgctgcctc 179 ||||||| ||| ||||||||||||| Sbjct: 1322 tctccccacccacctctgctgcctc 1346 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5067 Number of Sequences: 15275 Number of extensions: 5067 Number of successful extensions: 1467 Number of sequences better than 10: 50 length of query: 417 length of database: 15836343 effective HSP length: 16 effective length of query: 401 effective length of database: 15591943 effective search space: 6252369143 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)