BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 773c07 (382 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.19355 mb70g12.r1 Mus musculus cDNA, 5' end /clone=IMA... 206 4e-53 gnl|UG|Mm.458 mt19h05.r1 Mus musculus cDNA, 5' end /clone=IMAGE... 94 4e-19 gnl|UG|Mm.24444 mt24a01.r1 Mus musculus cDNA, 5' end /clone=IMA... 34 0.29 gnl|UG|Mm.17774 AU044066 Mus musculus cDNA, 3' end /clone=J0914... 32 1.1 gnl|UG|Mm.28488 vc01h09.r1 Mus musculus cDNA, 5' end /clone=IMA... 30 4.5 >gnl|UG|Mm.19355 mb70g12.r1 Mus musculus cDNA, 5' end /clone=IMAGE:334822 /clone_end=5' /gb=W36441 /gi=1318345 /len=982 Length = 982 Score = 206 bits (104), Expect = 4e-53 Identities = 153/168 (91%), Positives = 153/168 (91%), Gaps = 1/168 (0%) Query: 1 gatctggggaaaagtaactcgggcccatggaaacagtgctatggttcgtgccaaattccg 60 |||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||| Sbjct: 222 gatctggggaaaggtaactcgggcccacggaaacagcggtatggttcgtgccaaattccg 281 Query: 61 aggcaaccttcctacaaaggccattggatacagaatgc-tgtgatgctgtacacatcccg 119 | ||||||||||| |||||||||||||| ||||||| | ||||||||||||| |||| || Sbjct: 282 aagcaaccttcctgcaaaggccattggacacagaatccgtgtgatgctgtacccatcgcg 341 Query: 120 gatttaaactcacggagagaaaataagtaaaagtagatttgtgctctt 167 |||||||||| | |||||| |||||| ||||||||||||||||||||| Sbjct: 342 gatttaaactaatggagagtaaataaataaaagtagatttgtgctctt 389 >gnl|UG|Mm.458 mt19h05.r1 Mus musculus cDNA, 5' end /clone=IMAGE:621561 /clone_end=5' /gb=AA178799 /gi=1760172 /len=521 Length = 521 Score = 93.7 bits (47), Expect = 4e-19 Identities = 96/111 (86%), Positives = 96/111 (86%), Gaps = 6/111 (5%) Query: 1 gatctggggaaaagtaactcgggcccatggaaacagtgctatggttcgtgccaaattccg 60 ||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||| | Sbjct: 106 gatctggggaaaagtaacttgggccgatggaaacagtg-----gtttgtgccaaattctg 52 Query: 61 aggcaaccttcctacaaaggccattggatacagaatgc-tgtgatgctgta 110 | ||||||||||| |||| ||||||||| ||||||| | |||||||||||| Sbjct: 51 aagcaaccttcctgcaaaagccattggacacagaatccgtgtgatgctgta 1 >gnl|UG|Mm.24444 mt24a01.r1 Mus musculus cDNA, 5' end /clone=IMAGE:621960 /clone_end=5' /gb=AA183747 /gi=1767177 /len=424 Length = 424 Score = 34.2 bits (17), Expect = 0.29 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 346 ccacagtgcacatgtgg 362 ||||||||||||||||| Sbjct: 379 ccacagtgcacatgtgg 363 >gnl|UG|Mm.17774 AU044066 Mus musculus cDNA, 3' end /clone=J0914D09 /clone_end=3' /gb=AU044066 /gi=3979541 /len=419 Length = 419 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 227 ctatttttacatttat 242 |||||||||||||||| Sbjct: 208 ctatttttacatttat 223 >gnl|UG|Mm.28488 vc01h09.r1 Mus musculus cDNA, 5' end /clone=IMAGE:765281 /clone_end=5' /gb=AA273459 /gi=1913454 /len=609 Length = 609 Score = 30.2 bits (15), Expect = 4.5 Identities = 18/19 (94%), Positives = 18/19 (94%) Query: 228 tatttttacatttatttat 246 ||||| ||||||||||||| Sbjct: 539 tatttatacatttatttat 521 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3221 Number of Sequences: 15275 Number of extensions: 3221 Number of successful extensions: 732 Number of sequences better than 10: 20 length of query: 382 length of database: 15836343 effective HSP length: 16 effective length of query: 366 effective length of database: 15591943 effective search space: 5706651138 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)