BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 772g11 (369 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.21870 C76205 Mus musculus cDNA, 3' end /clone=J0005F0... 105 9e-23 gnl|UG|Mm.807 Protein kinase, interferon inducible double stran... 36 0.071 gnl|UG|Mm.21286 ms86c05.r1 Mus musculus cDNA, 5' end /clone=IMA... 32 1.1 gnl|UG|Mm.28877 ui48h10.x1 Mus musculus cDNA, 3' end /clone=IMA... 32 1.1 gnl|UG|Mm.6413 mu46a01.r1 Mus musculus cDNA, 5' end /clone=IMAG... 32 1.1 >gnl|UG|Mm.21870 C76205 Mus musculus cDNA, 3' end /clone=J0005F08 /clone_end=3' /gb=C76205 /gi=2516535 /len=575 Length = 575 Score = 105 bits (53), Expect = 9e-23 Identities = 107/123 (86%), Positives = 107/123 (86%), Gaps = 3/123 (2%) Query: 96 tgagctcacagaatgaaacactgctttaaacttactatgaac--ccttctgaaactccct 153 |||||| | ||||||||| |||||||| || ||||||||| | ||||||| || ||||| Sbjct: 173 tgagcttatagaatgaaatactgctttgaatttactatgagcatccttctgtaattccct 114 Query: 154 tttg-tgaaacattttatctacgaggtaattttataaagaacttttgtctaagaaagtat 212 ||| || |||||||||||| ||||||||||||||||||||||||||||||||| |||| Sbjct: 113 ttttatgtaacattttatctgtgaggtaattttataaagaacttttgtctaagaangtat 54 Query: 213 aaa 215 ||| Sbjct: 53 aaa 51 Score = 58.0 bits (29), Expect = 2e-08 Identities = 62/73 (84%), Positives = 62/73 (84%) Query: 22 attctaggtcaggtccaaggcagaagccacaggtgtgcactattataaagcaaagtcatg 81 |||||||||||| ||||||| ||||||||||||| |||| || |||||| | | |||| Sbjct: 258 attctaggtcagatccaaggatgaagccacaggtgagcaccatgataaagtgaggccatg 199 Query: 82 tgaaactgttgct 94 |||||||||||| Sbjct: 198 ggaaactgttgct 186 >gnl|UG|Mm.807 Protein kinase, interferon inducible double stranded RNA dependent /cds=(141,1697) /gb=M65029 /gi=201067 /len=2299 Length = 2299 Score = 36.2 bits (18), Expect = 0.071 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 240 tggctttgggggctctgt 257 |||||||||||||||||| Sbjct: 1985 tggctttgggggctctgt 1968 >gnl|UG|Mm.21286 ms86c05.r1 Mus musculus cDNA, 5' end /clone=IMAGE:618440 /clone_end=5' /gb=AA175322 /gi=1756487 /len=523 Length = 523 Score = 32.2 bits (16), Expect = 1.1 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 12 aaaatcatttattcta 27 |||||||||||||||| Sbjct: 269 aaaatcatttattcta 254 >gnl|UG|Mm.28877 ui48h10.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1885699 /clone_end=3' /gb=AI117712 /gi=3518036 /len=810 Length = 810 Score = 32.2 bits (16), Expect = 1.1 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 149 tcccttttgtgaaacatttt 168 ||||||| |||||||||||| Sbjct: 476 tccctttagtgaaacatttt 495 >gnl|UG|Mm.6413 mu46a01.r1 Mus musculus cDNA, 5' end /clone=IMAGE:642408 /clone_end=5' /gb=AA184879 /gi=1768525 /len=411 Length = 411 Score = 32.2 bits (16), Expect = 1.1 Identities = 52/64 (81%), Positives = 52/64 (81%) Query: 31 caggtccaaggcagaagccacaggtgtgcactattataaagcaaagtcatgtgaaactgt 90 ||||| ||||| |||||| || ||||||||| | | ||| ||| | ||||| ||||||| Sbjct: 172 caggtacaaggatgaagccccaagtgtgcactctgagaaaacaaggccatgtaaaactgt 231 Query: 91 tgct 94 |||| Sbjct: 232 tgct 235 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3136 Number of Sequences: 15275 Number of extensions: 3136 Number of successful extensions: 870 Number of sequences better than 10: 18 length of query: 369 length of database: 15836343 effective HSP length: 16 effective length of query: 353 effective length of database: 15591943 effective search space: 5503955879 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)