BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 764a09 (329 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942... 72 1e-12 gnl|UG|Mm.26877 AU044722 Mus musculus cDNA, 3' end /clone=J0924... 72 1e-12 gnl|UG|Mm.17782 AU044215 Mus musculus cDNA, 3' end /clone=J0916... 70 5e-12 gnl|UG|Mm.26643 ud67d06.x1 Mus musculus cDNA, 3' end /clone=IMA... 34 0.25 gnl|UG|Mm.18344 Mouse mRNA for TBPIP, complete cds /cds=(24,677... 32 0.98 >gnl|UG|Mm.17841 AU045821 Mus musculus cDNA, 3' end /clone=J0942C06 /clone_end=3' /gb=AU045821 /gi=3982004 /len=512 Length = 512 Score = 71.9 bits (36), Expect = 1e-12 Identities = 39/40 (97%), Positives = 39/40 (97%) Query: 56 taccaaaagcaatctacagagtcaatgcaatccccatcaa 95 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 134 taccaaaagcaatctacagattcaatgcaatccccatcaa 95 >gnl|UG|Mm.26877 AU044722 Mus musculus cDNA, 3' end /clone=J0924B10 /clone_end=3' /gb=AU044722 /gi=3980905 /len=569 Length = 569 Score = 71.9 bits (36), Expect = 1e-12 Identities = 152/188 (80%), Positives = 152/188 (80%), Gaps = 7/188 (3%) Query: 61 aaagcaatctacagagtcaatgcaatccccatcaagataccaagttaattcttcagagag 120 ||||||||||||||| ||||||||||||||||||| || |||| | | ||||||| ||| Sbjct: 317 aaagcaatctacagattcaatgcaatccccatcaaaattccaactcagttcttcactgag 258 Query: 121 atagaaagagcaattctcaactttagctgaaata--acaaattccaggagagcaaaaact 178 ||||||| |||||| ||| || | ||| |||| | ||| | |||| | |||||||| Sbjct: 257 ttagaaagggcaatttgcaaattcatctggaataataaaaaacctaggataacaaaaact 198 Query: 179 atcctcaacattaaa-gaacttctgggggaatcaaca----tgacctcaagctgtgctac 233 || ||||||| |||| |||| | ||| ||||||| || |||||||||||||| |||| Sbjct: 197 attctcaacaataaaggaacgtttggtggaatcaccatgcctgacctcaagctgtactac 138 Query: 234 agagcaat 241 |||||||| Sbjct: 137 agagcaat 130 >gnl|UG|Mm.17782 AU044215 Mus musculus cDNA, 3' end /clone=J0916F09 /clone_end=3' /gb=AU044215 /gi=3979750 /len=341 Length = 341 Score = 69.9 bits (35), Expect = 5e-12 Identities = 65/75 (86%), Positives = 65/75 (86%) Query: 61 aaagcaatctacagagtcaatgcaatccccatcaagataccaagttaattcttcagagag 120 ||||||||||||||| ||||||||||||| ||||| || |||| | ||||||||| ||| Sbjct: 93 aaagcaatctacagattcaatgcaatcccaatcaaaattccaaatcaattcttcactgag 34 Query: 121 atagaaagagcaatt 135 ||||||| |||||| Sbjct: 33 ttagaaagggcaatt 19 >gnl|UG|Mm.26643 ud67d06.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1450955 /clone_end=3' /gb=AI174071 /gi=3720213 /len=638 Length = 638 Score = 34.2 bits (17), Expect = 0.25 Identities = 23/25 (92%), Positives = 23/25 (92%) Query: 156 caaattccaggagagcaaaaactat 180 |||||||||||||||| | |||||| Sbjct: 152 caaattccaggagagccagaactat 176 >gnl|UG|Mm.18344 Mouse mRNA for TBPIP, complete cds /cds=(24,677) /gb=AB000121 /gi=2578817 /len=872 Length = 872 Score = 32.2 bits (16), Expect = 0.98 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 307 gtacagagacagacag 322 |||||||||||||||| Sbjct: 510 gtacagagacagacag 525 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2488 Number of Sequences: 15275 Number of extensions: 2488 Number of successful extensions: 686 Number of sequences better than 10: 17 length of query: 329 length of database: 15836343 effective HSP length: 16 effective length of query: 313 effective length of database: 15591943 effective search space: 4880278159 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)