BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 718b03 (254 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.3939 Myeloid ecotropic viral integration site-related... 88 1e-17 gnl|UG|Mm.4734 Myeloid ecotropic viral integration site 1 /cds=... 48 1e-05 gnl|UG|Mm.27695 vj82d03.r1 Mus musculus cDNA, 5' end /clone=IMA... 34 0.19 gnl|UG|Mm.4479 Mus musculus RalBP1-associated EH domain protein... 32 0.75 gnl|UG|Mm.1479 AU035829 Mus musculus cDNA /clone=MNCb-0928 /gb=... 30 3.0 >gnl|UG|Mm.3939 Myeloid ecotropic viral integration site-related gene 1 /cds=(282,1487) /gb=U57343 /gi=1724053 /len=3431 Length = 3431 Score = 87.7 bits (44), Expect = 1e-17 Identities = 50/52 (96%), Positives = 50/52 (96%) Query: 1 cttttctaactccagaagatgaaaccttagcacttgtattgcttgtatcatc 52 |||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 771 cttttctaactccagaagatgaaaccttagtacttgaattgcttgtatcatc 720 >gnl|UG|Mm.4734 Myeloid ecotropic viral integration site 1 /cds=(448,1620) /gb=U33629 /gi=1002783 /len=3158 Length = 3158 Score = 48.1 bits (24), Expect = 1e-05 Identities = 33/36 (91%), Positives = 33/36 (91%) Query: 17 agatgaaaccttagcacttgtattgcttgtatcatc 52 ||||||||||||| ||||||||| ||||| |||||| Sbjct: 915 agatgaaaccttaacacttgtatggcttgaatcatc 880 >gnl|UG|Mm.27695 vj82d03.r1 Mus musculus cDNA, 5' end /clone=IMAGE:935525 /clone_end=5' /gb=AA543478 /gi=2291955 /len=621 Length = 621 Score = 34.2 bits (17), Expect = 0.19 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 174 tgggcaaagaaagaaga 190 ||||||||||||||||| Sbjct: 333 tgggcaaagaaagaaga 317 >gnl|UG|Mm.4479 Mus musculus RalBP1-associated EH domain protein Reps1 (reps1) mRNA, complete cds /cds=(0,2231) /gb=AF031939 /gi=2677842 /len=2416 Length = 2416 Score = 32.2 bits (16), Expect = 0.75 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 226 gaaataaggaaaccaa 241 |||||||||||||||| Sbjct: 2102 gaaataaggaaaccaa 2117 >gnl|UG|Mm.1479 AU035829 Mus musculus cDNA /clone=MNCb-0928 /gb=AU035829 /gi=3718837 /len=792 Length = 792 Score = 30.2 bits (15), Expect = 3.0 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 200 gtggtcaggcaaaaa 214 ||||||||||||||| Sbjct: 571 gtggtcaggcaaaaa 557 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2134 Number of Sequences: 15275 Number of extensions: 2134 Number of successful extensions: 562 Number of sequences better than 10: 21 length of query: 254 length of database: 15836343 effective HSP length: 16 effective length of query: 238 effective length of database: 15591943 effective search space: 3710882434 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)