BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 341h10 (342 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.23372 mm31g08.x1 Mus musculus cDNA, 3' end /clone=IMA... 72 1e-12 gnl|UG|Mm.1346 Integrin alpha 4 (Cd49d) /cds=(137,3256) /gb=X53... 70 5e-12 gnl|UG|Mm.26335 AU022824 Mus musculus cDNA, 3' end /clone=J0421... 66 7e-11 gnl|UG|Mm.25900 AU015180 Mus musculus cDNA, 3' end /clone=J0708... 64 3e-10 gnl|UG|Mm.6757 vc52f02.r1 Mus musculus cDNA, 3' end /clone=IMAG... 58 2e-08 >gnl|UG|Mm.23372 mm31g08.x1 Mus musculus cDNA, 3' end /clone=IMAGE:523166 /clone_end=3' /gb=AI427963 /len=332 Length = 332 Score = 71.9 bits (36), Expect = 1e-12 Identities = 42/44 (95%), Positives = 42/44 (95%) Query: 4 ggaaaggggataacatttgaaatgtaaataaaggaaatagccaa 47 ||||||||||||||||||||||||||||||||| ||||| |||| Sbjct: 47 ggaaaggggataacatttgaaatgtaaataaagaaaatatccaa 4 >gnl|UG|Mm.1346 Integrin alpha 4 (Cd49d) /cds=(137,3256) /gb=X53176 /gi=51484 /len=4829 Length = 4829 Score = 69.9 bits (35), Expect = 5e-12 Identities = 38/39 (97%), Positives = 38/39 (97%) Query: 4 ggaaaggggataacatttgaaatgtaaataaaggaaata 42 ||||||||||||||||||||||||||||||||| ||||| Sbjct: 3763 ggaaaggggataacatttgaaatgtaaataaagaaaata 3725 >gnl|UG|Mm.26335 AU022824 Mus musculus cDNA, 3' end /clone=J0421B06 /clone_end=3' /gb=AU022824 /gi=3393171 /len=593 Length = 593 Score = 65.9 bits (33), Expect = 7e-11 Identities = 42/45 (93%), Positives = 42/45 (93%) Query: 4 ggaaaggggataacatttgaaatgtaaataaaggaaatagccaat 48 ||||||||||||||||||||||| ||||||||| ||||| ||||| Sbjct: 45 ggaaaggggataacatttgaaatttaaataaagaaaatatccaat 1 >gnl|UG|Mm.25900 AU015180 Mus musculus cDNA, 3' end /clone=J0708G06 /clone_end=3' /gb=AU015180 /gi=3369971 /len=585 Length = 585 Score = 63.9 bits (32), Expect = 3e-10 Identities = 32/32 (100%), Positives = 32/32 (100%) Query: 4 ggaaaggggataacatttgaaatgtaaataaa 35 |||||||||||||||||||||||||||||||| Sbjct: 66 ggaaaggggataacatttgaaatgtaaataaa 35 >gnl|UG|Mm.6757 vc52f02.r1 Mus musculus cDNA, 3' end /clone=IMAGE:778203 /clone_end=3' /gb=AA416453 /gi=2075745 /len=480 Length = 480 Score = 58.0 bits (29), Expect = 2e-08 Identities = 35/37 (94%), Positives = 35/37 (94%) Query: 6 aaaggggataacatttgaaatgtaaataaaggaaata 42 |||||||||| |||||||||||||||||||| ||||| Sbjct: 70 aaaggggatagcatttgaaatgtaaataaagaaaata 34 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2054 Number of Sequences: 15275 Number of extensions: 2054 Number of successful extensions: 627 Number of sequences better than 10: 67 length of query: 342 length of database: 15836343 effective HSP length: 16 effective length of query: 326 effective length of database: 15591943 effective search space: 5082973418 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)