BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 215d08 (282 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.4822 Mouse Hox2.3 mRNA /cds=(2164,2817) /gb=X06762 /g... 36 0.053 gnl|UG|Mm.18732 Mus musculus clone L10 variable group of 2-cell... 32 0.83 gnl|UG|Mm.12054 AU024104 Mus musculus cDNA, 3' end /clone=J0446... 32 0.83 gnl|UG|Mm.28767 Murine crp gene for C-reactive protein /cds=(84... 32 0.83 gnl|UG|Mm.5491 C76428 Mus musculus cDNA, 3' end /clone=J0010E03... 32 0.83 >gnl|UG|Mm.4822 Mouse Hox2.3 mRNA /cds=(2164,2817) /gb=X06762 /gi=51389 /len=3554 Length = 3554 Score = 36.2 bits (18), Expect = 0.053 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 240 gtttctatttccattttt 257 |||||||||||||||||| Sbjct: 1217 gtttctatttccattttt 1234 >gnl|UG|Mm.18732 Mus musculus clone L10 variable group of 2-cell-stage gene family mRNA, complete cds /cds=(166,675) /gb=AF067058 /gi=3171133 /len=874 Length = 874 Score = 32.2 bits (16), Expect = 0.83 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 218 ctccttttgtgtattt 233 |||||||||||||||| Sbjct: 364 ctccttttgtgtattt 379 >gnl|UG|Mm.12054 AU024104 Mus musculus cDNA, 3' end /clone=J0446F05 /clone_end=3' /gb=AU024104 /gi=3394451 /len=487 Length = 487 Score = 32.2 bits (16), Expect = 0.83 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 234 tttattgtttctatttccattttt 257 |||| |||||||||||| |||||| Sbjct: 57 tttagtgtttctatttcaattttt 34 >gnl|UG|Mm.28767 Murine crp gene for C-reactive protein /cds=(84,761) /gb=X13588 /gi=50571 /len=1683 Length = 1683 Score = 32.2 bits (16), Expect = 0.83 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 158 gatgatgcttgcatct 173 |||||||||||||||| Sbjct: 543 gatgatgcttgcatct 528 >gnl|UG|Mm.5491 C76428 Mus musculus cDNA, 3' end /clone=J0010E03 /clone_end=3' /gb=C76428 /gi=2516758 /len=587 Length = 587 Score = 32.2 bits (16), Expect = 0.83 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 234 tttattgtttctatttccattttt 257 ||||||||||||| || ||||||| Sbjct: 26 tttattgtttctactttcattttt 49 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2754 Number of Sequences: 15275 Number of extensions: 2754 Number of successful extensions: 793 Number of sequences better than 10: 31 length of query: 282 length of database: 15836343 effective HSP length: 16 effective length of query: 266 effective length of database: 15591943 effective search space: 4147456838 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)