BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 081e05 (301 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.6932 mc28c04.r1 Mus musculus cDNA, 5' end /clone=IMAG... 32 0.89 gnl|UG|Mm.5612 mc03g06.r1 Mus musculus cDNA, 5' end /clone=IMAG... 32 0.89 gnl|UG|Mm.19040 Cut (Drosophila)-like 1 /cds=(322,4320) /gb=X75... 30 3.5 gnl|UG|Mm.354 Calbindin-28K /cds=(135,920) /gb=D26352 /gi=99561... 30 3.5 >gnl|UG|Mm.6932 mc28c04.r1 Mus musculus cDNA, 5' end /clone=IMAGE:349830 /clone_end=5' /gb=W30299 /gi=1310466 /len=989 Length = 989 Score = 32.2 bits (16), Expect = 0.89 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 58 gaagcatctggaacac 73 |||||||||||||||| Sbjct: 456 gaagcatctggaacac 441 >gnl|UG|Mm.5612 mc03g06.r1 Mus musculus cDNA, 5' end /clone=IMAGE:337882 /clone_end=5' /gb=W29550 /gi=1309698 /len=994 Length = 994 Score = 32.2 bits (16), Expect = 0.89 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 14 cacatcaaagcagaca 29 |||||||||||||||| Sbjct: 50 cacatcaaagcagaca 35 >gnl|UG|Mm.19040 Cut (Drosophila)-like 1 /cds=(322,4320) /gb=X75013 /gi=402589 /len=6203 Length = 6203 Score = 30.2 bits (15), Expect = 3.5 Identities = 24/27 (88%), Positives = 24/27 (88%) Query: 28 cacactcaaactaatagaagaaaaact 54 ||||||||||| | | ||||||||||| Sbjct: 775 cacactcaaacaactggaagaaaaact 801 >gnl|UG|Mm.354 Calbindin-28K /cds=(135,920) /gb=D26352 /gi=995612 /len=1717 Length = 1717 Score = 30.2 bits (15), Expect = 3.5 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 62 catctggaacacatg 76 ||||||||||||||| Sbjct: 1645 catctggaacacatg 1631 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1820 Number of Sequences: 15275 Number of extensions: 1820 Number of successful extensions: 458 Number of sequences better than 10: 14 length of query: 301 length of database: 15836343 effective HSP length: 16 effective length of query: 285 effective length of database: 15591943 effective search space: 4443703755 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)