BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02303 (610 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.5048 Mouse mRNA for mCDC46 protein, complete cds /cds... 76 1e-13 gnl|UG|Mm.26052 AU017548 Mus musculus cDNA, 3' end /clone=J0740... 40 0.008 gnl|UG|Mm.24467 C85861 Mus musculus cDNA, 3' end /clone=J0215F0... 34 0.47 gnl|UG|Mm.17377 ue91e08.x1 Mus musculus cDNA, 3' end /clone=IMA... 34 0.47 gnl|UG|Mm.4763 MyoD family inhibitor /cds=(28,783) /gb=U57821 /... 32 1.9 >gnl|UG|Mm.5048 Mouse mRNA for mCDC46 protein, complete cds /cds=(84,2285) /gb=D26090 /gi=940403 /len=2649 Length = 2649 Score = 75.8 bits (38), Expect = 1e-13 Identities = 38/38 (100%), Positives = 38/38 (100%) Query: 341 gaactcaagcggcattacaacctgggtgaatactggat 378 |||||||||||||||||||||||||||||||||||||| Sbjct: 256 gaactcaagcggcattacaacctgggtgaatactggat 293 >gnl|UG|Mm.26052 AU017548 Mus musculus cDNA, 3' end /clone=J0740F06 /clone_end=3' /gb=AU017548 /gi=3373038 /len=588 Length = 588 Score = 40.1 bits (20), Expect = 0.008 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 403 agttctttctcaaaaaacaa 422 |||||||||||||||||||| Sbjct: 100 agttctttctcaaaaaacaa 119 >gnl|UG|Mm.24467 C85861 Mus musculus cDNA, 3' end /clone=J0215F08 /clone_end=3' /gb=C85861 /gi=2917818 /len=579 Length = 579 Score = 34.2 bits (17), Expect = 0.47 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 406 tctttctcaaaaaacaa 422 ||||||||||||||||| Sbjct: 263 tctttctcaaaaaacaa 279 >gnl|UG|Mm.17377 ue91e08.x1 Mus musculus cDNA, 3' end /clone=IMAGE:1498502 /clone_end=3' /gb=AI173473 /gi=3719615 /len=455 Length = 455 Score = 34.2 bits (17), Expect = 0.47 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 528 tatgtggaggtcagaga 544 ||||||||||||||||| Sbjct: 267 tatgtggaggtcagaga 251 >gnl|UG|Mm.4763 MyoD family inhibitor /cds=(28,783) /gb=U57821 /gi=1545985 /len=1530 Length = 1530 Score = 32.2 bits (16), Expect = 1.9 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 528 tatgtggaggtcagag 543 |||||||||||||||| Sbjct: 815 tatgtggaggtcagag 800 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3303 Number of Sequences: 15275 Number of extensions: 3303 Number of successful extensions: 246 Number of sequences better than 10: 13 length of query: 610 length of database: 15836343 effective HSP length: 17 effective length of query: 593 effective length of database: 15576668 effective search space: 9236964124 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)