BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 02113 (236 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.24987 C78218 Mus musculus cDNA, 3' end /clone=J0044E1... 46 5e-05 gnl|UG|Mm.23465 mo45a01.x1 Mus musculus cDNA, 3' end /clone=IMA... 42 7e-04 gnl|UG|Mm.2271 Mus musculus chemokine MMRP2 mRNA, complete cds ... 42 7e-04 gnl|UG|Mm.29324 mf52a12.y1 Mus musculus cDNA, 5' end /clone=IMA... 36 0.044 gnl|UG|Mm.19251 AU044475 Mus musculus cDNA, 3' end /clone=J0920... 36 0.044 >gnl|UG|Mm.24987 C78218 Mus musculus cDNA, 3' end /clone=J0044E10 /clone_end=3' /gb=C78218 /gi=2518548 /len=579 Length = 579 Score = 46.1 bits (23), Expect = 5e-05 Identities = 49/57 (85%), Positives = 49/57 (85%), Gaps = 3/57 (5%) Query: 30 atgtgagtactagaaattgaacccaggtcctctagaagaa---ccagtgctcttaac 83 ||||| || |||| ||||||||||||||||||| | |||| |||||||||||||| Sbjct: 170 atgtgggtgctaggaattgaacccaggtcctctggtagaacggccagtgctcttaac 226 Score = 38.2 bits (19), Expect = 0.011 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 71 cagtgctcttaaccagtgaacca 93 ||||||||||||||| ||||||| Sbjct: 291 cagtgctcttaaccactgaacca 269 >gnl|UG|Mm.23465 mo45a01.x1 Mus musculus cDNA, 3' end /clone=IMAGE:556488 /clone_end=3' /gb=AI428575 /len=452 Length = 452 Score = 42.1 bits (21), Expect = 7e-04 Identities = 47/55 (85%), Positives = 47/55 (85%), Gaps = 3/55 (5%) Query: 44 aattgaacccaggtcctctagaagaacca---gtgctcttaaccagtgaaccatc 95 ||||||||||||| ||||| ||||||| ||||||||||||| ||||||||| Sbjct: 142 aattgaacccaggacctctggaagaacagctggtgctcttaaccactgaaccatc 196 >gnl|UG|Mm.2271 Mus musculus chemokine MMRP2 mRNA, complete cds /cds=(153,521) /gb=U15209 /gi=915275 /len=1255 Length = 1255 Score = 42.1 bits (21), Expect = 7e-04 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 42 gaaattgaacccaggtcctct 62 ||||||||||||||||||||| Sbjct: 850 gaaattgaacccaggtcctct 830 >gnl|UG|Mm.29324 mf52a12.y1 Mus musculus cDNA, 5' end /clone=IMAGE:408670 /clone_end=5' /gb=AI430295 /len=481 Length = 481 Score = 36.2 bits (18), Expect = 0.044 Identities = 44/52 (84%), Positives = 44/52 (84%), Gaps = 3/52 (5%) Query: 47 tgaacccaggtcctctagaag---aaccagtgctcttaaccagtgaaccatc 95 |||||||||||||||| |||| | | |||||||||||||| ||| ||||| Sbjct: 288 tgaacccaggtcctctggaaggacatcgagtgctcttaaccactgagccatc 339 >gnl|UG|Mm.19251 AU044475 Mus musculus cDNA, 3' end /clone=J0920D07 /clone_end=3' /gb=AU044475 /gi=3980658 /len=350 Length = 350 Score = 36.2 bits (18), Expect = 0.044 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 53 caggtcctctagaagaac 70 |||||||||||||||||| Sbjct: 140 caggtcctctagaagaac 157 Score = 30.2 bits (15), Expect = 2.7 Identities = 15/15 (100%), Positives = 15/15 (100%) Query: 70 ccagtgctcttaacc 84 ||||||||||||||| Sbjct: 164 ccagtgctcttaacc 178 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2266 Number of Sequences: 15275 Number of extensions: 2266 Number of successful extensions: 669 Number of sequences better than 10: 68 length of query: 236 length of database: 15836343 effective HSP length: 16 effective length of query: 220 effective length of database: 15591943 effective search space: 3430227460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)