BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01383 (496 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.15093 Mus musculus mRNA for ITM, complete cds /cds=(2... 76 1e-13 gnl|UG|Mm.9854 mz63h11.r1 Mus musculus cDNA, 5' end /clone=IMAG... 34 0.38 gnl|UG|Mm.21710 vd21d12.s1 Mus musculus cDNA, 5' end /clone=IMA... 34 0.38 gnl|UG|Mm.27281 AU042655 Mus musculus cDNA, 3' end /clone=J1025... 32 1.5 gnl|UG|Mm.3123 Mus musculus mRNA for cornichon-like protein, co... 32 1.5 >gnl|UG|Mm.15093 Mus musculus mRNA for ITM, complete cds /cds=(263,1483) /gb=AB012084 /gi=3551147 /len=1537 Length = 1537 Score = 60.0 bits (30), Expect = 7e-09 Identities = 39/42 (92%), Positives = 39/42 (92%) Query: 455 ccatgcccaggcccacaacagcaaagactagtacactggatc 496 |||||||||| ||||||||||||||||| || |||||||||| Sbjct: 1176 ccatgcccagtcccacaacagcaaagaccagcacactggatc 1135 Score = 75.8 bits (38), Expect = 1e-13 Identities = 66/75 (88%), Positives = 66/75 (88%), Gaps = 1/75 (1%) Query: 55 cctgtgtntgaagcagatacagccntggtcagcatgctgttttgtgantatgttgagagc 114 ||||||| |||||| || |||||| |||||||||||||| | ||||| || |||||||| Sbjct: 1297 cctgtgtctgaagcggacacagccttggtcagcatgctg-tctgtgactacgttgagagt 1239 Query: 115 acagagactgaatac 129 ||||||||||||||| Sbjct: 1238 acagagactgaatac 1224 >gnl|UG|Mm.9854 mz63h11.r1 Mus musculus cDNA, 5' end /clone=IMAGE:718149 /clone_end=5' /gb=AA266346 /gi=1902442 /len=560 Length = 560 Score = 34.2 bits (17), Expect = 0.38 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 84 cagcatgctgttttgtg 100 ||||||||||||||||| Sbjct: 31 cagcatgctgttttgtg 47 >gnl|UG|Mm.21710 vd21d12.s1 Mus musculus cDNA, 5' end /clone=IMAGE:793175 /clone_end=5' /gb=AA438008 /gi=2142922 /len=471 Length = 471 Score = 34.2 bits (17), Expect = 0.38 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 84 cagcatgctgttttgtg 100 ||||||||||||||||| Sbjct: 410 cagcatgctgttttgtg 426 >gnl|UG|Mm.27281 AU042655 Mus musculus cDNA, 3' end /clone=J1025G03 /clone_end=3' /gb=AU042655 /gi=3956890 /len=588 Length = 588 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 110 agagcacagagactga 125 |||||||||||||||| Sbjct: 465 agagcacagagactga 480 >gnl|UG|Mm.3123 Mus musculus mRNA for cornichon-like protein, complete cds /cds=(158,823) /gb=AB006191 /gi=2317275 /len=1239 Length = 1239 Score = 32.2 bits (16), Expect = 1.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 265 gcctggggagggggga 280 |||||||||||||||| Sbjct: 1099 gcctggggagggggga 1084 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4901 Number of Sequences: 15275 Number of extensions: 4901 Number of successful extensions: 1431 Number of sequences better than 10: 5 length of query: 496 length of database: 15836343 effective HSP length: 17 effective length of query: 479 effective length of database: 15576668 effective search space: 7461223972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)