BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D2Rat8
         (846 letters)

Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
           15,275 sequences; 15,836,343 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Mm.27508 mx84b10.r1 Mus musculus cDNA, 5' end /clone=IMA...   113  9e-25
gnl|UG|Mm.26235 AU020740 Mus musculus cDNA, 3' end /clone=J0537...    84  8e-16
gnl|UG|Mm.19312 uj37f11.x1 Mus musculus cDNA, 3' end /clone=IMA...    76  2e-13
gnl|UG|Mm.6813 M.musculus mRNA for bone morphogenetic protein 4...    62  3e-09
gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766) ...    58  5e-08

>gnl|UG|Mm.27508 mx84b10.r1 Mus musculus cDNA, 5' end
           /clone=IMAGE:693019 /clone_end=5' /gb=AA397097
           /gi=2050120 /len=519
           Length = 519
           
 Score =  113 bits (57), Expect = 9e-25
 Identities = 115/133 (86%), Positives = 115/133 (86%), Gaps = 1/133 (0%)

                                                                       
Query: 332 ttctagagctttgaggtgtgctgtcaagctacggacatatgctctctcttgtttctttct 391
           |||||||||||| ||||||||||||||||| |   |||||||||||||| |||||||| |
Sbjct: 519 ttctagagcttttaggtgtgctgtcaagctgctagcatatgctctctctagtttcttttt 460

                                                                       
Query: 392 gccagcactcagagctatgagttttcct-cttagcacagctttcattgtgtcccataagt 450
           |   ||| ||||||||||||||||| || ||||| |  |||||||||||||||||||| |
Sbjct: 459 gatggcagtcagagctatgagtttttctccttaggaatgctttcattgtgtcccataaat 400

                        
Query: 451 ttgggtatgttgt 463
           |||||| ||||||
Sbjct: 399 ttgggtttgttgt 387


>gnl|UG|Mm.26235 AU020740 Mus musculus cDNA, 3' end /clone=J0537D12
           /clone_end=3' /gb=AU020740 /gi=3376324 /len=413
           Length = 413
           
 Score = 83.8 bits (42), Expect = 8e-16
 Identities = 87/102 (85%), Positives = 87/102 (85%)

                                                                       
Query: 260 ttggttgatttcagctctgagtttgataatttcctgccttctactccttctgggtgtatt 319
           |||| |||||| ||| ||||||||| | |||||||| | |||||||||  || ||||| |
Sbjct: 5   ttggctgattttagccctgagtttgtttatttcctgacatctactcctcttgtgtgtact 64

                                                     
Query: 320 tgcttctttttgttctagagctttgaggtgtgctgtcaagct 361
           | ||||| |||||| ||||||||| |||||||||||||||||
Sbjct: 65  tccttctgtttgttgtagagctttcaggtgtgctgtcaagct 106


 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 46/52 (88%), Positives = 46/52 (88%)

                                                               
Query: 396 gcactcagagctatgagttttcctcttagcacagctttcattgtgtcccata 447
           ||||| ||||||||||| |||||||||||||  |  ||||||||||||||||
Sbjct: 126 gcacttagagctatgaggtttcctcttagcatggagttcattgtgtcccata 177


>gnl|UG|Mm.19312 uj37f11.x1 Mus musculus cDNA, 3' end
           /clone=IMAGE:1922157 /clone_end=3' /gb=AI315678 /len=526
           Length = 526
           
 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 65/74 (87%), Positives = 65/74 (87%)

                                                                       
Query: 263 gttgatttcagctctgagtttgataatttcctgccttctactccttctgggtgtatttgc 322
           ||||||||||   ||||||||||| |||||||||| |||||||||  ||||||| |||| 
Sbjct: 349 gttgatttcattcctgagtttgattatttcctgccctctactcctcttgggtgtgtttgt 408

                         
Query: 323 ttctttttgttcta 336
           ||||||||||||||
Sbjct: 409 ttctttttgttcta 422


 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 59/66 (89%), Positives = 59/66 (89%)

                                                                       
Query: 172 tggctaagggtttatctatcttgttgattttctcaaagaaccaacttttggttctgttga 231
           ||||||||||  |||||||||||||||||||||||||||||||  || ||||| ||||||
Sbjct: 272 tggctaagggcctatctatcttgttgattttctcaaagaaccaggttctggttttgttga 331

                 
Query: 232 ttcttt 237
            |||||
Sbjct: 332 atcttt 337


>gnl|UG|Mm.6813 M.musculus mRNA for bone morphogenetic protein 4
            (BMP-4) /cds=(356,1582) /gb=X56848 /gi=50180 /len=1785
            Length = 1785
            
 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 33/34 (97%), Positives = 33/34 (97%)

                                              
Query: 109  cttgnatgcctgcaggtcgactctagaggatccc 142
            |||| |||||||||||||||||||||||||||||
Sbjct: 1784 cttgcatgcctgcaggtcgactctagaggatccc 1751


>gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766)
           /gb=D55720 /gi=893392 /len=2048
           Length = 2048
           
 Score = 58.0 bits (29), Expect = 5e-08
 Identities = 29/29 (100%), Positives = 29/29 (100%)

                                        
Query: 114 atgcctgcaggtcgactctagaggatccc 142
           |||||||||||||||||||||||||||||
Sbjct: 3   atgcctgcaggtcgactctagaggatccc 31


  Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
    Posted date:  Feb 17, 1999  1:37 AM
  Number of letters in database: 15,836,343
  Number of sequences in database:  15,275
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5335
Number of Sequences: 15275
Number of extensions: 5335
Number of successful extensions: 453
Number of sequences better than 10: 29
length of query: 846
length of database: 15836343
effective HSP length: 17
effective length of query: 829
effective length of database: 15576668
effective search space: 12913057772
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)