BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D12Rat14
         (865 letters)

Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
           15,275 sequences; 15,836,343 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953)...   170  4e-42
gnl|UG|Mm.26358 AU023004 Mus musculus cDNA, 3' end /clone=J0423...   123  9e-28
gnl|UG|Mm.10468 uc82e03.x1 Mus musculus cDNA, 3' end /clone=IMA...    72  3e-12
gnl|UG|Mm.11189 AU016873 Mus musculus cDNA, 3' end /clone=J0731...    66  2e-10
gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766) ...    54  7e-07

>gnl|UG|Mm.4989 Murine tlm oncogene for tlm protein /cds=(0,953)
           /gb=X52634 /gi=53528 /len=1425
           Length = 1425
           
 Score =  170 bits (86), Expect = 4e-42
 Identities = 137/154 (88%), Positives = 137/154 (88%)

                                                                       
Query: 104 acatccttagtcattagggaaatgcaaatcaaaacaaccctgagatcccacctcatgtca 163
           |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||   ||
Sbjct: 881 acatccttagtcatcagggaaatgcaaatcaaaacaaccctgagattccatctcacacca 822

                                                                       
Query: 164 gtcagaatggctaagatgaaaaactcaggtgacagcagatgctggcgaggatgtggagaa 223
           |||| ||||||||| || ||||| |||| || || ||||||||| |||||||||||||||
Sbjct: 821 gtcaaaatggctaaaatcaaaaattcagatggcaacagatgctgacgaggatgtggagaa 762

                                             
Query: 224 agaggaacactcctccattgctggtgggattgca 257
           ||| | |||||||||||||||||||| |||||||
Sbjct: 761 agaaggacactcctccattgctggtgagattgca 728


 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 37/41 (90%), Positives = 37/41 (90%)

                                                    
Query: 47  aaagaattctcaactgaggaatattgaatggctgagaagca 87
           |||| ||| ||||||||||||| | ||||||||||||||||
Sbjct: 929 aaaggattatcaactgaggaatctcgaatggctgagaagca 889


>gnl|UG|Mm.26358 AU023004 Mus musculus cDNA, 3' end /clone=J0423H09
           /clone_end=3' /gb=AU023004 /gi=3393351 /len=546
           Length = 546
           
 Score =  123 bits (62), Expect = 9e-28
 Identities = 167/194 (86%), Positives = 167/194 (86%), Gaps = 6/194 (3%)

                                                                       
Query: 47  aaagaattctcaactgaggaatattgaatggctgagaagcacctaaggaaatgttcaaca 106
           ||||||||||||| |||||||  |  || |||| ||||||||||||  ||| ||||||||
Sbjct: 266 aaagaattctcaagtgaggaaactcaaagggct-agaagcacctaaa-aaaggttcaaca 323

                                                                       
Query: 107 tccttagtcattagggaaatgcaaatcaaaacaaccctgagatcccacctcatgtcagtc 166
           |||| ||| || ||| ||||||||||||||||||||||||||| |||||||||  | |||
Sbjct: 324 tcct-agttatcaggaaaatgcaaatcaaaacaaccctgagattccacctcat-accgtc 381

                                                                       
Query: 167 agaat-ggctaagatgaaaaactcaggtgacagcagatgctggcgaggatgtggagaaag 225
           ||||| ||||||||| |||||||||||||| |||||| |  ||| || ||||||||||||
Sbjct: 382 agaatgggctaagattaaaaactcaggtgagagcagagggcggctagaatgtggagaaag 441

                         
Query: 226 aggaacactcctcc 239
           | ||||||||||||
Sbjct: 442 a-gaacactcctcc 454


>gnl|UG|Mm.10468 uc82e03.x1 Mus musculus cDNA, 3' end
           /clone=IMAGE:1432156 /clone_end=3' /gb=AA986381
           /gi=3168035 /len=475
           Length = 475
           
 Score = 71.9 bits (36), Expect = 3e-12
 Identities = 54/60 (90%), Positives = 54/60 (90%)

                                                                       
Query: 99  gttcaacatccttagtcattagggaaatgcaaatcaaaacaaccctgagatcccacctca 158
           |||||||| |||||||||| ||  ||| ||||||||||||||||||||||| ||||||||
Sbjct: 91  gttcaacacccttagtcatcagaaaaaggcaaatcaaaacaaccctgagattccacctca 32


>gnl|UG|Mm.11189 AU016873 Mus musculus cDNA, 3' end /clone=J0731B02
           /clone_end=3' /gb=AU016873 /gi=3371877 /len=414
           Length = 414
           
 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 84/101 (83%), Positives = 84/101 (83%)

                                                                       
Query: 100 ttcaacatccttagtcattagggaaatgcaaatcaaaacaaccctgagatcccacctcat 159
           ||||||||| |||| ||| || ||||| ||||| ||||||||  |||||| ||| || | 
Sbjct: 80  ttcaacatctttagccatcagagaaatacaaataaaaacaactttgagattccatcttac 139

                                                    
Query: 160 gtcagtcagaatggctaagatgaaaaactcaggtgacagca 200
             | ||||||||||||||||| ||||||||| |||||||||
Sbjct: 140 agctgtcagaatggctaagatcaaaaactcaagtgacagca 180


>gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766)
          /gb=D55720 /gi=893392 /len=2048
          Length = 2048
          
 Score = 54.0 bits (27), Expect = 7e-07
 Identities = 29/30 (96%), Positives = 29/30 (96%)

                                        
Query: 1  atgccngcaggtcgactctagaggatcccc 30
          ||||| ||||||||||||||||||||||||
Sbjct: 3  atgcctgcaggtcgactctagaggatcccc 32


  Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
    Posted date:  Feb 17, 1999  1:37 AM
  Number of letters in database: 15,836,343
  Number of sequences in database:  15,275
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5395
Number of Sequences: 15275
Number of extensions: 5395
Number of successful extensions: 486
Number of sequences better than 10: 27
length of query: 865
length of database: 15836343
effective HSP length: 17
effective length of query: 848
effective length of database: 15576668
effective search space: 13209014464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)