BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D10Rat83
         (510 letters)

Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
           15,275 sequences; 15,836,343 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Mm.3940 Lethal giant larvae homolog /cds=(21,3125) /gb=D...   200  3e-51
gnl|UG|Mm.25044 vn12c02.r1 Mus musculus cDNA, 5' end /clone=IMA...   100  8e-21
gnl|UG|Mm.10826 Uromodulin /cds=(129,2057) /gb=L33406 /gi=92720...    42  0.002
gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766) ...    40  0.006
gnl|UG|Mm.6813 M.musculus mRNA for bone morphogenetic protein 4...    38  0.025

>gnl|UG|Mm.3940 Lethal giant larvae homolog /cds=(21,3125) /gb=D16141
            /gi=414350 /len=4264
            Length = 4264
            
 Score =  200 bits (101), Expect = 3e-51
 Identities = 125/132 (94%), Positives = 125/132 (94%), Gaps = 2/132 (1%)

                                                                        
Query: 156  ggcagtgaggatgggcttccctgtagatgccaccttcggcttttct--cttttttaaaaa 213
            ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||
Sbjct: 4133 ggcagtgaggatgggcttccctgtagatgccaccttcggcttttctgtctttttttaaaa 4192

                                                                        
Query: 214  actagttgttttaatattaagggtgctgattttgtaatattgaaaataaaagcatttaat 273
            ||||||||||||||||||||  || |||||||| ||||||||||||||||||||||||||
Sbjct: 4193 actagttgttttaatattaaaagtactgattttttaatattgaaaataaaagcatttaat 4252

                        
Query: 274  atcttttaaact 285
            ||||||||||||
Sbjct: 4253 atcttttaaact 4264


>gnl|UG|Mm.25044 vn12c02.r1 Mus musculus cDNA, 5' end
           /clone=IMAGE:1020962 /clone_end=5' /gb=AA646339
           /gi=2572768 /len=595
           Length = 595
           
 Score = 99.6 bits (50), Expect = 8e-21
 Identities = 83/94 (88%), Positives = 83/94 (88%)

                                                                       
Query: 278 tttaaactacttctgcacatacgtggacacactggtagggctttgggctgtgtgctgctt 337
           |||||||||| |||||||| | |||||||||||||| |||||| ||||||||||||||||
Sbjct: 1   tttaaactacatctgcacacatgtggacacactggtggggcttggggctgtgtgctgctt 60

                                             
Query: 338 gcaggatgtgagtagatgaagcaggtactaggag 371
           ||||| ||||  ||| || ||||||||| |||||
Sbjct: 61  gcaggctgtggctagctggagcaggtacgaggag 94


>gnl|UG|Mm.10826 Uromodulin /cds=(129,2057) /gb=L33406 /gi=927202
            /len=2343
            Length = 2343
            
 Score = 42.1 bits (21), Expect = 0.002
 Identities = 21/21 (100%), Positives = 21/21 (100%)

                                 
Query: 386  gaattcgtaatcatggtcata 406
            |||||||||||||||||||||
Sbjct: 2323 gaattcgtaatcatggtcata 2343


>gnl|UG|Mm.12508 Karyopherin (importin) alpha 2 /cds=(177,1766)
           /gb=D55720 /gi=893392 /len=2048
           Length = 2048
           
 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%), Positives = 20/20 (100%)

                               
Query: 373 gggtaccgagctcgaattcg 392
           ||||||||||||||||||||
Sbjct: 33  gggtaccgagctcgaattcg 52


 Score = 36.2 bits (18), Expect = 0.099
 Identities = 25/26 (96%), Positives = 25/26 (96%), Gaps = 1/26 (3%)

                                    
Query: 9  ctgcaggtcga-tctagaggatcccc 33
          ||||||||||| ||||||||||||||
Sbjct: 7  ctgcaggtcgactctagaggatcccc 32


>gnl|UG|Mm.6813 M.musculus mRNA for bone morphogenetic protein 4
            (BMP-4) /cds=(356,1582) /gb=X56848 /gi=50180 /len=1785
            Length = 1785
            
 Score = 38.2 bits (19), Expect = 0.025
 Identities = 19/19 (100%), Positives = 19/19 (100%)

                               
Query: 373  gggtaccgagctcgaattc 391
            |||||||||||||||||||
Sbjct: 1749 gggtaccgagctcgaattc 1731


 Score = 36.2 bits (18), Expect = 0.099
 Identities = 25/26 (96%), Positives = 25/26 (96%), Gaps = 1/26 (3%)

                                      
Query: 9    ctgcaggtcga-tctagaggatcccc 33
            ||||||||||| ||||||||||||||
Sbjct: 1775 ctgcaggtcgactctagaggatcccc 1750


  Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq
    Posted date:  Feb 17, 1999  1:37 AM
  Number of letters in database: 15,836,343
  Number of sequences in database:  15,275
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5103
Number of Sequences: 15275
Number of extensions: 5103
Number of successful extensions: 450
Number of sequences better than 10: 22
length of query: 510
length of database: 15836343
effective HSP length: 17
effective length of query: 493
effective length of database: 15576668
effective search space: 7679297324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 15 (30.2 bits)