BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D10Rat33 (584 letters) Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq 15,275 sequences; 15,836,343 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Mm.26046 AU017494 Mus musculus cDNA, 3' end /clone=J0739... 155 2e-37 gnl|UG|Mm.4582 Mus musculus c-mer tyrosine kinase receptor mRNA... 56 1e-07 gnl|UG|Mm.10826 Uromodulin /cds=(129,2057) /gb=L33406 /gi=92720... 42 0.002 gnl|UG|Mm.11127 AU016476 Mus musculus cDNA, 3' end /clone=J0725... 38 0.029 gnl|UG|Mm.384 Interleukin 9 receptor /cds=(4,1410) /gb=M84746 /... 32 1.8 >gnl|UG|Mm.26046 AU017494 Mus musculus cDNA, 3' end /clone=J0739H03 /clone_end=3' /gb=AU017494 /gi=3372984 /len=591 Length = 591 Score = 155 bits (78), Expect = 2e-37 Identities = 136/154 (88%), Positives = 136/154 (88%), Gaps = 1/154 (0%) Query: 190 tggtgtgaggtatttgaatctaatacatgtggtttgaatgagagtatctcccataagctc 249 ||||||||||| ||||||| || || || |||||||||| | | ||||||||||| |||| Sbjct: 153 tggtgtgaggtgtttgaatatagta-atatggtttgaataaaaatatctcccataggctc 95 Query: 250 atatatttgaataacccatccccagttggtagaactgtttgggaaggattaggaggtgcg 309 ||||||||||||| |||||| |||||||||||||||||||| |||||||||||||| | Sbjct: 94 atatatttgaatacttcatccctagttggtagaactgtttggggaggattaggaggtgtg 35 Query: 310 gtcttatttgaggacggatggggtttcaggtttc 343 ||||||| ||||| ||||||||||||||||||| Sbjct: 34 atcttattggaggagggatggggtttcaggtttc 1 Score = 91.7 bits (46), Expect = 2e-18 Identities = 104/122 (85%), Positives = 104/122 (85%), Gaps = 1/122 (0%) Query: 21 atggattcttatccctttggaaccatgaacgacattaaactc-ttcttttataagttact 79 |||||||||| |||| |||||||||||||| | | ||||||| ||||||||||||| ||| Sbjct: 311 atggattcttgtcccattggaaccatgaacaaaaataaactccttcttttataagtcact 252 Query: 80 tttgtgttttatcatagcaatggaaaggtagccagtacaaatttttagatctacatcctg 139 | ||||||||||| |||||| |||| || |||||| ||||||||| | |||||| ||| Sbjct: 251 tctgtgttttatcccagcaatacaaagataaccagtaaaaatttttacacctacatactg 192 Query: 140 tg 141 || Sbjct: 191 tg 190 >gnl|UG|Mm.4582 Mus musculus c-mer tyrosine kinase receptor mRNA, complete cds /cds=(49,3033) /gb=U21301 /gi=885969 /len=3564 Length = 3564 Score = 56.0 bits (28), Expect = 1e-07 Identities = 34/36 (94%), Positives = 34/36 (94%) Query: 271 ccagttggtagaactgtttgggaaggattaggaggt 306 ||||||||| ||| |||||||||||||||||||||| Sbjct: 3380 ccagttggtggaattgtttgggaaggattaggaggt 3345 >gnl|UG|Mm.10826 Uromodulin /cds=(129,2057) /gb=L33406 /gi=927202 /len=2343 Length = 2343 Score = 42.1 bits (21), Expect = 0.002 Identities = 21/21 (100%), Positives = 21/21 (100%) Query: 463 gaattcgtaatcatggtcata 483 ||||||||||||||||||||| Sbjct: 2323 gaattcgtaatcatggtcata 2343 >gnl|UG|Mm.11127 AU016476 Mus musculus cDNA, 3' end /clone=J0725F11 /clone_end=3' /gb=AU016476 /gi=3371480 /len=558 Length = 558 Score = 38.2 bits (19), Expect = 0.029 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 477 ggtcatagctgtttcctgtgtg 498 |||||||||||||||| ||||| Sbjct: 537 ggtcatagctgtttccngtgtg 558 >gnl|UG|Mm.384 Interleukin 9 receptor /cds=(4,1410) /gb=M84746 /gi=194044 /len=3020 Length = 3020 Score = 32.2 bits (16), Expect = 1.8 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 397 ttgagatgtgagctct 412 |||||||||||||||| Sbjct: 2157 ttgagatgtgagctct 2142 Database: /ddhome/DDsys/GenDB/UniGeneMm/Mm.seq.uniq Posted date: Feb 17, 1999 1:37 AM Number of letters in database: 15,836,343 Number of sequences in database: 15,275 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4501 Number of Sequences: 15275 Number of extensions: 4501 Number of successful extensions: 353 Number of sequences better than 10: 17 length of query: 584 length of database: 15836343 effective HSP length: 17 effective length of query: 567 effective length of database: 15576668 effective search space: 8831970756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)