BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 392g08 (297 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.147632 qh16b06.x1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.63 gnl|UG|Hs.27212 HSC0SC112 Homo sapiens cDNA, 3' end /clone=c-0s... 34 0.63 gnl|UG|Hs.54971 tf02b05.x1 Homo sapiens cDNA, 3' end /clone=IMA... 34 0.63 gnl|UG|Hs.114788 zi05c03.r1 Homo sapiens cDNA, 5' end /clone=IM... 32 2.5 >gnl|UG|Hs.147632 qh16b06.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1844819 /clone_end=3' /gb=AI218308 /gi=3798123 /len=345 Length = 345 Score = 34.2 bits (17), Expect = 0.63 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 200 ctagagagatagctagg 216 ||||||||||||||||| Sbjct: 283 ctagagagatagctagg 299 >gnl|UG|Hs.27212 HSC0SC112 Homo sapiens cDNA, 3' end /clone=c-0sc11 /clone_end=3' /gb=F02206 /gi=645763 /len=228 Length = 228 Score = 34.2 bits (17), Expect = 0.63 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 103 gcatctgcatgtggtac 119 ||||||||||||||||| Sbjct: 200 gcatctgcatgtggtac 216 >gnl|UG|Hs.54971 tf02b05.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:2094993 /clone_end=3' /gb=AI424382 /len=639 Length = 639 Score = 34.2 bits (17), Expect = 0.63 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 20 ctttcccagtcccttga 36 ||||||||||||||||| Sbjct: 396 ctttcccagtcccttga 412 >gnl|UG|Hs.114788 zi05c03.r1 Homo sapiens cDNA, 5' end /clone=IMAGE:429892 /clone_end=5' /gb=AA033911 /gi=1505729 /len=405 Length = 405 Score = 32.2 bits (16), Expect = 2.5 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 77 tccaaggttcttttct 92 |||||||||||||||| Sbjct: 39 tccaaggttcttttct 54 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5423 Number of Sequences: 62236 Number of extensions: 5423 Number of successful extensions: 1473 Number of sequences better than 10: 8 length of query: 297 length of database: 45520635 effective HSP length: 17 effective length of query: 280 effective length of database: 44462623 effective search space: 12449534440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)