BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 2525 (490 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.32197 Human protein tyrosine kinase mRNA, complete cd... 117 9e-26 gnl|UG|Hs.158232 Homo sapiens mRNA for KIAA0474 protein, comple... 34 1.1 gnl|UG|Hs.158300 Homo sapiens neuroan1 mRNA, complete cds /cds=... 34 1.1 gnl|UG|Hs.585 Apolipoprotein B /cds=(128,13819) /gb=X04506 /gi=... 34 1.1 gnl|UG|Hs.143897 Homo sapiens dysferlin mRNA, complete cds /cds... 32 4.2 >gnl|UG|Hs.32197 Human protein tyrosine kinase mRNA, complete cds /cds=(113,3043) /gb=M59371 /gi=181943 /len=3921 Length = 3921 Score = 117 bits (59), Expect = 9e-26 Identities = 124/146 (84%), Positives = 124/146 (84%) Query: 328 ggattcttcaagtctgaggcatctgagagccnttgcctgcagtgtccggagcataccctg 387 ||||| || |||| ||||||||||||||||| ||| || |||| || ||||| || ||| Sbjct: 948 ggattttttaagtttgaggcatctgagagcccctgcttggagtgccctgagcacacgctg 1007 Query: 388 ccatccactgagggtgccacctcctgccagtgtgaagaaggctatttcagggcacctgag 447 |||||| |||||||||||||||||||| ||||||| ||||||| ||| |||||||| || Sbjct: 1008 ccatcccctgagggtgccacctcctgcgagtgtgaggaaggcttcttccgggcacctcag 1067 Query: 448 gacccactgtccatgccctgcacacg 473 |||||| ||| ||||| |||||||| Sbjct: 1068 gacccagcgtcgatgccttgcacacg 1093 >gnl|UG|Hs.158232 Homo sapiens mRNA for KIAA0474 protein, complete cds /cds=(292,1029) /gb=AB007943 /gi=3413909 /len=5591 Length = 5591 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 294 ctgtctctccttgtgcctctc 314 |||||||||||||||| |||| Sbjct: 2515 ctgtctctccttgtgcttctc 2535 >gnl|UG|Hs.158300 Homo sapiens neuroan1 mRNA, complete cds /cds=(10,1869) /gb=AF040723 /gi=3282690 /len=3925 Length = 3925 Score = 34.2 bits (17), Expect = 1.1 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 212 tggtgtccaggagacgctggc 232 |||| |||||||||||||||| Sbjct: 1297 tggtttccaggagacgctggc 1317 >gnl|UG|Hs.585 Apolipoprotein B /cds=(128,13819) /gb=X04506 /gi=34330 /len=14121 Length = 14121 Score = 34.2 bits (17), Expect = 1.1 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 203 aggttattttggtgtcc 219 ||||||||||||||||| Sbjct: 7599 aggttattttggtgtcc 7583 >gnl|UG|Hs.143897 Homo sapiens dysferlin mRNA, complete cds /cds=(373,6615) /gb=AF075575 /gi=3600027 /len=6886 Length = 6886 Score = 32.2 bits (16), Expect = 4.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 314 cagcctgttctccagg 329 |||||||||||||||| Sbjct: 5383 cagcctgttctccagg 5368 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9861 Number of Sequences: 62236 Number of extensions: 9861 Number of successful extensions: 2630 Number of sequences better than 10: 13 length of query: 490 length of database: 45520635 effective HSP length: 17 effective length of query: 473 effective length of database: 44462623 effective search space: 21030820679 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)