BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 215d08 (282 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.129740 Homo sapiens mRNA for KIAA0565 protein, comple... 38 0.038 gnl|UG|Hs.132389 aj25c09.s1 Homo sapiens cDNA, 3' end /clone=13... 36 0.15 gnl|UG|Hs.155591 Human forkhead protein FREAC-1 mRNA, complete ... 34 0.60 gnl|UG|Hs.116369 ow44c09.x1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.60 gnl|UG|Hs.23094 Human Line-1 repeat mRNA with 2 open reading fr... 32 2.4 >gnl|UG|Hs.129740 Homo sapiens mRNA for KIAA0565 protein, complete cds /cds=(1423,3045) /gb=AB011137 /gi=3043653 /len=5694 Length = 5694 Score = 38.2 bits (19), Expect = 0.038 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 230 attttttattgtttctatttcca 252 |||||||||||| |||||||||| Sbjct: 1552 attttttattgtatctatttcca 1530 >gnl|UG|Hs.132389 aj25c09.s1 Homo sapiens cDNA, 3' end /clone=1391344 /clone_end=3' /gb=AA781361 /len=492 Length = 492 Score = 36.2 bits (18), Expect = 0.15 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 153 ctgttgatgatgcttgca 170 |||||||||||||||||| Sbjct: 363 ctgttgatgatgcttgca 380 >gnl|UG|Hs.155591 Human forkhead protein FREAC-1 mRNA, complete cds /cds=(93,1157) /gb=U13219 /gi=1223839 /len=2510 Length = 2510 Score = 34.2 bits (17), Expect = 0.60 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 220 ccttttgtgtatttttt 236 ||||||||||||||||| Sbjct: 2426 ccttttgtgtatttttt 2442 >gnl|UG|Hs.116369 ow44c09.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1649680 /clone_end=3' /gb=AI028528 /gi=3245837 /len=512 Length = 512 Score = 34.2 bits (17), Expect = 0.60 Identities = 23/25 (92%), Positives = 23/25 (92%) Query: 230 attttttattgtttctatttccatt 254 |||||| ||||||||||||| |||| Sbjct: 215 atttttaattgtttctattttcatt 191 >gnl|UG|Hs.23094 Human Line-1 repeat mRNA with 2 open reading frames /cds=(876,1892) /gb=M19503 /gi=337662 /len=5976 Length = 5976 Score = 32.2 bits (16), Expect = 2.4 Identities = 19/20 (95%), Positives = 19/20 (95%) Query: 230 attttttattgtttctattt 249 |||||||||||| ||||||| Sbjct: 3141 attttttattgtgtctattt 3122 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9742 Number of Sequences: 62236 Number of extensions: 9742 Number of successful extensions: 2770 Number of sequences better than 10: 26 length of query: 282 length of database: 45520635 effective HSP length: 17 effective length of query: 265 effective length of database: 44462623 effective search space: 11782595095 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)