BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 108c09 (273 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.122908 Homo sapiens clone 24767 mRNA sequence /cds=UN... 34 0.58 gnl|UG|Hs.138449 af54h02.s1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.58 gnl|UG|Hs.40893 an29d08.x1 Homo sapiens cDNA, 3' end /clone=IMA... 32 2.3 gnl|UG|Hs.156927 zf91g12.s1 Homo sapiens cDNA, 3' end /clone=38... 32 2.3 >gnl|UG|Hs.122908 Homo sapiens clone 24767 mRNA sequence /cds=UNKNOWN /gb=AF070552 /gi=3387916 /len=1465 Length = 1465 Score = 34.2 bits (17), Expect = 0.58 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 213 acactttggtcttcctt 229 ||||||||||||||||| Sbjct: 1317 acactttggtcttcctt 1333 >gnl|UG|Hs.138449 af54h02.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:1035507 /clone_end=3' /gb=AA621729 /gi=2525668 /len=589 Length = 589 Score = 34.2 bits (17), Expect = 0.58 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 134 cttcagtttctgcttga 150 ||||||||||||||||| Sbjct: 549 cttcagtttctgcttga 565 >gnl|UG|Hs.40893 an29d08.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1700079 /clone_end=3' /gb=AI061467 /gi=3336835 /len=810 Length = 810 Score = 32.2 bits (16), Expect = 2.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 217 tttggtcttccttctt 232 |||||||||||||||| Sbjct: 794 tttggtcttccttctt 809 >gnl|UG|Hs.156927 zf91g12.s1 Homo sapiens cDNA, 3' end /clone=384358 /clone_end=3' /gb=AA709467 /len=488 Length = 488 Score = 32.2 bits (16), Expect = 2.3 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 220 ggtcttccttcttctt 235 |||||||||||||||| Sbjct: 62 ggtcttccttcttctt 47 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5638 Number of Sequences: 62236 Number of extensions: 5638 Number of successful extensions: 1499 Number of sequences better than 10: 14 length of query: 273 length of database: 45520635 effective HSP length: 17 effective length of query: 256 effective length of database: 44462623 effective search space: 11382431488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)