BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 104a09 (267 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.116549 Homo sapiens DNA sequence from PAC 212G6 on ch... 36 0.14 gnl|UG|Hs.8417 zk95a05.s1 Homo sapiens cDNA, 3' end /clone=IMAG... 34 0.57 gnl|UG|Hs.121990 zj04h06.s1 Homo sapiens cDNA, 3' end /clone=44... 32 2.2 gnl|UG|Hs.3363 Homo sapiens mRNA for KIAA0214 protein, complete... 32 2.2 >gnl|UG|Hs.116549 Homo sapiens DNA sequence from PAC 212G6 on chromosome Xp11.3-p11.4. Contains synapsin 1, brain protein 4.1, properdin, tyrosine kinase (ELK1) oncogene, ESTs, STS, GSS /cds=(9150,10436) /gb=AL009172 /gi=3183858 /len=11099 Length = 11099 Score = 36.2 bits (18), Expect = 0.14 Identities = 22/24 (91%), Positives = 22/24 (91%) Query: 192 ccattatanaangggagggggagg 215 |||||||| || |||||||||||| Sbjct: 387 ccattatacaacgggagggggagg 364 >gnl|UG|Hs.8417 zk95a05.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:490544 /clone_end=3' /gb=AA126797 /gi=1686279 /len=516 Length = 516 Score = 34.2 bits (17), Expect = 0.57 Identities = 20/21 (95%), Positives = 20/21 (95%) Query: 46 aaaaacaacaatgccaaccaa 66 ||||||||| ||||||||||| Sbjct: 115 aaaaacaacgatgccaaccaa 135 >gnl|UG|Hs.121990 zj04h06.s1 Homo sapiens cDNA, 3' end /clone=449339 /clone_end=3' /gb=AA777920 /len=456 Length = 456 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 76 ccagggactaaaccac 91 |||||||||||||||| Sbjct: 288 ccagggactaaaccac 273 >gnl|UG|Hs.3363 Homo sapiens mRNA for KIAA0214 protein, complete cds /cds=(322,2595) /gb=D86987 /gi=3869186 /len=4550 Length = 4550 Score = 32.2 bits (16), Expect = 2.2 Identities = 16/16 (100%), Positives = 16/16 (100%) Query: 43 cataaaaacaacaatg 58 |||||||||||||||| Sbjct: 4405 cataaaaacaacaatg 4390 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2752 Number of Sequences: 62236 Number of extensions: 2752 Number of successful extensions: 738 Number of sequences better than 10: 4 length of query: 267 length of database: 45520635 effective HSP length: 17 effective length of query: 250 effective length of database: 44462623 effective search space: 11115655750 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)