BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01975 (361 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.102808 yz46c07.s1 Homo sapiens cDNA, 3' end /clone=IM... 38 0.050 gnl|UG|Hs.127721 oq33h10.s1 Homo sapiens cDNA, 3' end /clone=IM... 36 0.20 gnl|UG|Hs.98507 Homo sapiens mRNA for KIAA0543 protein, partial... 36 0.20 gnl|UG|Hs.138343 yf78a06.s1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.78 gnl|UG|Hs.157020 am10h10.s1 Homo sapiens cDNA, 3' end /clone=IM... 34 0.78 >gnl|UG|Hs.102808 yz46c07.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:286092 /clone_end=3' /gb=N67117 /gi=1219242 /len=296 Length = 296 Score = 38.2 bits (19), Expect = 0.050 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 251 aaaggatagttccaaacccaaag 273 ||||||||||| ||||||||||| Sbjct: 201 aaaggatagtttcaaacccaaag 179 >gnl|UG|Hs.127721 oq33h10.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:1588195 /clone_end=3' /gb=AA948260 /gi=3109513 /len=497 Length = 497 Score = 36.2 bits (18), Expect = 0.20 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 157 aagcatttaagaaccatcatta 178 |||||||||| ||||||||||| Sbjct: 130 aagcatttaataaccatcatta 151 >gnl|UG|Hs.98507 Homo sapiens mRNA for KIAA0543 protein, partial cds /cds=(0,3336) /gb=AB011115 /gi=3043609 /len=6443 Length = 6443 Score = 36.2 bits (18), Expect = 0.20 Identities = 18/18 (100%), Positives = 18/18 (100%) Query: 117 tccactctccctggtggg 134 |||||||||||||||||| Sbjct: 130 tccactctccctggtggg 113 >gnl|UG|Hs.138343 yf78a06.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:28297 /clone_end=3' /gb=R40433 /gi=820882 /len=472 Length = 472 Score = 34.2 bits (17), Expect = 0.78 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 344 aaatacggaaaaaagat 360 ||||||||||||||||| Sbjct: 127 aaatacggaaaaaagat 143 >gnl|UG|Hs.157020 am10h10.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:1466467 /clone_end=3' /gb=AA885521 /gi=2994598 /len=724 Length = 724 Score = 34.2 bits (17), Expect = 0.78 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 175 attaaaaataagcattt 191 ||||||||||||||||| Sbjct: 33 attaaaaataagcattt 17 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8050 Number of Sequences: 62236 Number of extensions: 8050 Number of successful extensions: 2111 Number of sequences better than 10: 15 length of query: 361 length of database: 45520635 effective HSP length: 17 effective length of query: 344 effective length of database: 44462623 effective search space: 15295142312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)