BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 01189 (298 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.115742 Homo sapiens tyrosine kinase pp60c-src (SRC) g... 38 0.041 gnl|UG|Hs.133519 Homo sapiens DNA polymerase eta (POLH) mRNA, c... 36 0.16 gnl|UG|Hs.115138 nc49c07.s1 Homo sapiens cDNA /clone=IMAGE:1011... 36 0.16 gnl|UG|Hs.12378 yc89f05.s1 Homo sapiens cDNA, 3' end /clone=IMA... 34 0.64 >gnl|UG|Hs.115742 Homo sapiens tyrosine kinase pp60c-src (SRC) gene, exon 12 and partial cds /cds=(0,208) /gb=AF077754 /gi=3406614 /len=2697 Length = 2697 Score = 38.2 bits (19), Expect = 0.041 Identities = 22/23 (95%), Positives = 22/23 (95%) Query: 71 ggccacatgtggggcaggctctg 93 ||||||||||||||||| ||||| Sbjct: 1510 ggccacatgtggggcagactctg 1488 >gnl|UG|Hs.133519 Homo sapiens DNA polymerase eta (POLH) mRNA, complete cds /cds=(413,5701) /gb=AF052573 /gi=3510694 /len=6572 Length = 6572 Score = 36.2 bits (18), Expect = 0.16 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 135 atgttatttctgaaggaagggg 156 |||||| ||||||||||||||| Sbjct: 2484 atgttacttctgaaggaagggg 2463 >gnl|UG|Hs.115138 nc49c07.s1 Homo sapiens cDNA /clone=IMAGE:1011468 /gb=AA230080 /gi=1852373 /len=377 Length = 377 Score = 36.2 bits (18), Expect = 0.16 Identities = 21/22 (95%), Positives = 21/22 (95%) Query: 249 tgctcatgaattcacatgcaca 270 ||||||||||| |||||||||| Sbjct: 29 tgctcatgaatgcacatgcaca 8 >gnl|UG|Hs.12378 yc89f05.s1 Homo sapiens cDNA, 3' end /clone=IMAGE:23244 /clone_end=3' /gb=R38692 /gi=796148 /len=611 Length = 611 Score = 34.2 bits (17), Expect = 0.64 Identities = 17/17 (100%), Positives = 17/17 (100%) Query: 94 aatgggtgttccttctg 110 ||||||||||||||||| Sbjct: 292 aatgggtgttccttctg 276 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10052 Number of Sequences: 62236 Number of extensions: 10052 Number of successful extensions: 2742 Number of sequences better than 10: 17 length of query: 298 length of database: 45520635 effective HSP length: 17 effective length of query: 281 effective length of database: 44462623 effective search space: 12493997063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 15 (30.2 bits)