BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 00264 (334 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,236 sequences; 45,520,635 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.23094 Human Line-1 repeat mRNA with 2 open reading fr... 62 3e-09 gnl|UG|Hs.103948 human kpni repeat mrna (cdna clone pcd-kpni-8)... 56 2e-07 gnl|UG|Hs.158148 20g10 Homo sapiens cDNA /gb=W26997 /gi=1306504... 52 3e-06 gnl|UG|Hs.158540 UDP glycosyltransferase 8 (UDP-galactose ceram... 50 1e-05 gnl|UG|Hs.145652 qi09b09.x1 Homo sapiens cDNA, 3' end /clone=IM... 48 5e-05 >gnl|UG|Hs.23094 Human Line-1 repeat mRNA with 2 open reading frames /cds=(876,1892) /gb=M19503 /gi=337662 /len=5976 Length = 5976 Score = 61.9 bits (31), Expect = 3e-09 Identities = 81/98 (82%), Positives = 81/98 (82%) Query: 237 ttccagaatggttgtaccagtctgcaatcccaccaacaatggaggagtgttcctctttct 296 ||||| |||||||| || ||| | || ||||||||||| || | ||||||||| ||||| Sbjct: 5420 ttccacaatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttct 5361 Query: 297 ccacatcntcgccagcatctgctgttacctgagttttt 334 ||||||| || |||||| ||| |||| ||||| ||||| Sbjct: 5360 ccacatcctctccagcacctgttgtttcctgacttttt 5323 >gnl|UG|Hs.103948 human kpni repeat mrna (cdna clone pcd-kpni-8), 3' end /cds=UNKNOWN /gb=K00627 /gi=337653 /len=2126 Length = 2126 Score = 56.0 bits (28), Expect = 2e-07 Identities = 60/71 (84%), Positives = 60/71 (84%) Query: 264 tcccaccaacaatggaggagtgttcctctttctccacatcntcgccagcatctgctgtta 323 ||||||||||| || | ||||||||| |||||||||||| || |||||| ||| |||| Sbjct: 1218 tcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgttc 1159 Query: 324 cctgagttttt 334 ||||| ||||| Sbjct: 1158 cctgacttttt 1148 >gnl|UG|Hs.158148 20g10 Homo sapiens cDNA /gb=W26997 /gi=1306504 /len=578 Length = 578 Score = 52.0 bits (26), Expect = 3e-06 Identities = 79/97 (81%), Positives = 79/97 (81%) Query: 237 ttccagaatggttgtaccagtctgcaatcccaccaacaatggaggagtgttcctctttct 296 ||||| |||||||| || ||| | || || |||||||| || | ||||||||| ||||| Sbjct: 242 ttccacaatggttgaactagtttacagtcacaccaacagtgtaaaagtgttcctatttct 183 Query: 297 ccacatcntcgccagcatctgctgttacctgagtttt 333 ||||||| || |||||| ||| |||| ||||| |||| Sbjct: 182 ccacatcctctccagcacctgttgtttcctgactttt 146 >gnl|UG|Hs.158540 UDP glycosyltransferase 8 (UDP-galactose ceramide galactosyltransferase) /cds=(515,2140) /gb=U30930 /gi=1407589 /len=2448 Length = 2448 Score = 50.1 bits (25), Expect = 1e-05 Identities = 75/92 (81%), Positives = 75/92 (81%) Query: 243 aatggttgtaccagtctgcaatcccaccaacaatggaggagtgttcctctttctccacat 302 |||||||| || ||| | || ||||||||||| || | ||||||||| ||||||||||| Sbjct: 159 aatggttgaactagtttacagtcccaccaacagtgtaaaagtgttcctatttctccacat 218 Query: 303 cntcgccagcatctgctgttacctgagttttt 334 | || || ||| ||| |||| ||||| ||||| Sbjct: 219 cctctccggcacctgttgtttcctgacttttt 250 >gnl|UG|Hs.145652 qi09b09.x1 Homo sapiens cDNA, 3' end /clone=IMAGE:1855961 /clone_end=3' /gb=AI264323 /gi=3872526 /len=510 Length = 510 Score = 48.1 bits (24), Expect = 5e-05 Identities = 38/43 (88%), Positives = 38/43 (88%) Query: 285 gttcctctttctccacatcntcgccagcatctgctgttacctg 327 ||||||| ||||||||||| || |||||||||| | ||||||| Sbjct: 197 gttcctcattctccacatcttcaccagcatctgttattacctg 155 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Feb 27, 1999 1:26 AM Number of letters in database: 45,520,635 Number of sequences in database: 62,236 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7433 Number of Sequences: 62236 Number of extensions: 7433 Number of successful extensions: 2004 Number of sequences better than 10: 26 length of query: 334 length of database: 45520635 effective HSP length: 17 effective length of query: 317 effective length of database: 44462623 effective search space: 14094651491 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)