BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DXRat36
         (574 letters)

Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
           62,851 sequences; 45,673,593 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Hs.9525 zu43c10.r1 Homo sapiens cDNA, 5' end /clone=IMAG...   163  2e-39
gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE...   133  2e-30
gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE...    80  2e-14
gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA63...    62  6e-09
gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00...    46  3e-04

>gnl|UG|Hs.9525 zu43c10.r1 Homo sapiens cDNA, 5' end
           /clone=IMAGE:740754 /clone_end=5' /gb=AA477265
           /gi=2205899 /len=563
           Length = 563
           
 Score =  163 bits (82), Expect = 2e-39
 Identities = 88/90 (97%), Positives = 88/90 (97%)

                                                                       
Query: 17  actgtcctacatctataatactagaggatacaatttaaaaggcattatttgagacttgat 76
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 238 actgtcctatatctataatactagaggatacaattaaaaaggcattatttgagacttgat 179

                                         
Query: 77  tctacttttccagcagagggcccaaaggat 106
           ||||||||||||||||||||||||||||||
Sbjct: 178 tctacttttccagcagagggcccaaaggat 149


>gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end
           /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045
           /len=447
           Length = 447
           
 Score =  133 bits (67), Expect = 2e-30
 Identities = 82/88 (93%), Positives = 82/88 (93%)

                                                                       
Query: 390 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcaaattccacacaa 449
           ||||||||||||||||||||||||   ||||||||||||||||||||| | | |||||||
Sbjct: 360 cgtaatcatggtcatagctgtttcnnntgtgaaattgttatccgctcacaattcacacaa 419

                                       
Query: 450 catacgagccggaagcataaagtgtaaa 477
           ||||||||||||||||||||||||||||
Sbjct: 420 catacgagccggaagcataaagtgtaaa 447


>gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end
           /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399
           /len=508
           Length = 508
           
 Score = 79.8 bits (40), Expect = 2e-14
 Identities = 101/112 (90%), Positives = 101/112 (90%), Gaps = 7/112 (6%)

                                                                       
Query: 390 cgtaatcatgg-tcatagctgtttcctgtgtgaaattgttatccgctca-aattccacac 447
           ||||||||||| ||||||||||| || |||| ||||||||||||| ||| ||||||||||
Sbjct: 393 cgtaatcatggatcatagctgttccc-gtgt-aaattgttatccg-tcacaattccacac 449

                                                               
Query: 448 aacatacgagccggaagcataaagtgtaaagctggggtg-ctaatgagtgag 498
           |||||||| ||||| ||||||||||||||  |||||||| ||||||||||||
Sbjct: 450 aacatacgggccgg-agcataaagtgtaagcctggggtgcctaatgagtgag 500


>gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA631969
           /gi=2554580 /len=556
           Length = 556
           
 Score = 61.9 bits (31), Expect = 6e-09
 Identities = 33/34 (97%), Positives = 33/34 (97%)

                                             
Query: 390 cgtaatcatggtcatagctgtttcctgtgtgaaa 423
           |||||||||||||||| |||||||||||||||||
Sbjct: 523 cgtaatcatggtcatanctgtttcctgtgtgaaa 556


>gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C
           /clone_end=5' /gb=T11417 /gi=391571 /len=320
           Length = 320
           
 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 93/109 (85%), Positives = 93/109 (85%), Gaps = 8/109 (7%)

                                                                       
Query: 390 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatccgctcaaattccacacaa 449
           ||||||||||||||||||||||  |||||||||  || ||| |||||| | | ||||| |
Sbjct: 219 cgtaatcatggtcatagctgtt--ctgtgtgaa--tg-tat-cgctcacaattcacac-a 271

                                                            
Query: 450 catacgagccggaagcataaagtgtaaagctggggtgctaatgagtgag 498
           |||||||||||||||||| ||||||||  |||||   ||||||||||||
Sbjct: 272 catacgagccggaagcat-aagtgtaagcctgggtgcctaatgagtgag 319


  Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
    Posted date:  Mar 4, 1999  1:26 AM
  Number of letters in database: 45,673,593
  Number of sequences in database:  62,851
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16920
Number of Sequences: 62851
Number of extensions: 16920
Number of successful extensions: 1604
Number of sequences better than 10: 64
length of query: 574
length of database: 45673593
effective HSP length: 18
effective length of query: 556
effective length of database: 44542275
effective search space: 24765504900
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)