BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D7Rat40
         (517 letters)

Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
           62,851 sequences; 45,673,593 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Hs.125878 Homo sapiens synapsin IIIa mRNA, complete cds ...   163  2e-39
gnl|UG|Hs.6439 Synapsin IIb /cds=(56,1492) /gb=U40215 /gi=15942...    72  5e-12
gnl|UG|Hs.163274 H.sapiens clathrin light chain a gene /cds=UNK...    60  2e-08
gnl|UG|Hs.54426 Human pancreatic polypeptide receptor mRNA, com...    52  5e-06
gnl|UG|Hs.44806 Homo sapiens zinc finger protein (MBLL) mRNA, c...    46  3e-04

>gnl|UG|Hs.125878 Homo sapiens synapsin IIIa mRNA, complete cds
           /cds=(36,1778) /gb=AF046873 /gi=3090888 /len=2153
           Length = 2153
           
 Score =  163 bits (82), Expect = 2e-39
 Identities = 130/146 (89%), Positives = 130/146 (89%)

                                                                       
Query: 88  agatcaaagtagaaaaccagcacgactaccaggacatcaccagcgtggtggccatggcca 147
           |||||||||| ||||||||||  |||| ||||||||||||||||||||| ||||||||||
Sbjct: 809 agatcaaagtggaaaaccagcttgacttccaggacatcaccagcgtggtcgccatggcca 868

                                                                       
Query: 148 aaacctatgccaccacggaggcctttattgactccaagtatgacatccgcatacagaaga 207
           |||| || |||||||| ||||| || || ||||||||||| ||||||||||| ||||| |
Sbjct: 869 aaacatacgccaccaccgaggcgttcatcgactccaagtacgacatccgcatccagaaaa 928

                                     
Query: 208 tcggatccaactacaaggcatacatg 233
           | ||||||||||||||||| ||||||
Sbjct: 929 ttggatccaactacaaggcttacatg 954


>gnl|UG|Hs.6439 Synapsin IIb /cds=(56,1492) /gb=U40215 /gi=1594276
            /len=2074
            Length = 2074
            
 Score = 71.9 bits (36), Expect = 5e-12
 Identities = 111/136 (81%), Positives = 111/136 (81%)

                                                                        
Query: 91   tcaaagtagaaaaccagcacgactaccaggacatcaccagcgtggtggccatggccaaaa 150
            ||||||| ||||||||  |||||| |||||||||  |||||||||||||  |  || | |
Sbjct: 895  tcaaagtggaaaaccactacgacttccaggacattgccagcgtggtggctctcacccaga 954

                                                                        
Query: 151  cctatgccaccacggaggcctttattgactccaagtatgacatccgcatacagaagatcg 210
            ||||||||||  | ||| | || |||||||||||||||||||||||  | |||||||| |
Sbjct: 955  cctatgccactgcagagcctttcattgactccaagtatgacatccgggtccagaagattg 1014

                            
Query: 211  gatccaactacaaggc 226
            |   ||||||||||||
Sbjct: 1015 gcaacaactacaaggc 1030


>gnl|UG|Hs.163274 H.sapiens clathrin light chain a gene /cds=UNKNOWN
            /gb=X81636 /gi=704460 /len=2737
            Length = 2737
            
 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 33/34 (97%), Positives = 33/34 (97%)

                                              
Query: 1    agcttccatgcctgcaggtcgactctagaggatc 34
            ||||| ||||||||||||||||||||||||||||
Sbjct: 2704 agcttgcatgcctgcaggtcgactctagaggatc 2737


>gnl|UG|Hs.54426 Human pancreatic polypeptide receptor mRNA, complete
            cds /cds=(85,1212) /gb=U42387 /gi=1314327 /len=1673
            Length = 1673
            
 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 29/30 (96%), Positives = 29/30 (96%)

                                          
Query: 1    agcttccatgcctgcaggtcgactctagag 30
            ||||| ||||||||||||||||||||||||
Sbjct: 1645 agcttgcatgcctgcaggtcgactctagag 1616


>gnl|UG|Hs.44806 Homo sapiens zinc finger protein (MBLL) mRNA,
            complete cds /cds=(782,1549) /gb=AF061261 /gi=3779239
            /len=2595
            Length = 2595
            
 Score = 46.1 bits (23), Expect = 3e-04
 Identities = 23/23 (100%), Positives = 23/23 (100%)

                                   
Query: 7    catgcctgcaggtcgactctaga 29
            |||||||||||||||||||||||
Sbjct: 2594 catgcctgcaggtcgactctaga 2572


  Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
    Posted date:  Mar 4, 1999  1:26 AM
  Number of letters in database: 45,673,593
  Number of sequences in database:  62,851
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13429
Number of Sequences: 62851
Number of extensions: 13429
Number of successful extensions: 1024
Number of sequences better than 10: 32
length of query: 517
length of database: 45673593
effective HSP length: 17
effective length of query: 500
effective length of database: 44605126
effective search space: 22302563000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)