BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D5Rat78
         (609 letters)

Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
           62,851 sequences; 45,673,593 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE...   111  7e-24
gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE...    76  4e-13
gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00...    58  9e-08
gnl|UG|Hs.146021 qk20h08.x1 Homo sapiens cDNA, 3' end /clone=IM...    36  0.34
gnl|UG|Hs.141542 yv42f01.s1 Homo sapiens cDNA, 3' end /clone=IM...    34  1.3

>gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end
           /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399
           /len=508
           Length = 508
           
 Score =  111 bits (56), Expect = 7e-24
 Identities = 80/86 (93%), Positives = 80/86 (93%), Gaps = 2/86 (2%)

                                                                       
Query: 377 attgttatccgcncacaattccacacaacatacgagccggtagcataaagtgtnagcctg 436
           |||||||||||  ||||||||||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 425 attgttatccg-tcacaattccacacaacatacgggccgg-agcataaagtgtaagcctg 482

                                     
Query: 437 gggtgcctaatgagtgagctaactca 462
           |||||||||||||||||||| |||||
Sbjct: 483 gggtgcctaatgagtgagcttactca 508


>gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end
           /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045
           /len=447
           Length = 447
           
 Score = 75.8 bits (38), Expect = 4e-13
 Identities = 50/53 (94%), Positives = 50/53 (94%), Gaps = 1/53 (1%)

                                                                
Query: 377 attgttatccgcncacaattccacacaacatacgagccggtagcataaagtgt 429
           |||||||||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct: 393 attgttatccgctcacaattc-acacaacatacgagccggaagcataaagtgt 444


>gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C
           /clone_end=5' /gb=T11417 /gi=391571 /len=320
           Length = 320
           
 Score = 58.0 bits (29), Expect = 9e-08
 Identities = 48/52 (92%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

                                                               
Query: 404 acatacgagccggtagcataaagtgtnagcctggggtgcctaatgagtgagc 455
           ||||||||||||| ||||||| |||| |||||||| ||||||||||||||||
Sbjct: 271 acatacgagccggaagcataa-gtgtaagcctggg-tgcctaatgagtgagc 320


>gnl|UG|Hs.146021 qk20h08.x1 Homo sapiens cDNA, 3' end
           /clone=IMAGE:1869567 /clone_end=3' /gb=AI263583
           /gi=3871786 /len=391
           Length = 391
           
 Score = 36.2 bits (18), Expect = 0.34
 Identities = 18/18 (100%), Positives = 18/18 (100%)

                             
Query: 269 ctacaaattctacccagc 286
           ||||||||||||||||||
Sbjct: 117 ctacaaattctacccagc 134


>gnl|UG|Hs.141542 yv42f01.s1 Homo sapiens cDNA, 3' end
           /clone=IMAGE:245401 /clone_end=3' /gb=N55008 /gi=1197887
           /len=456
           Length = 456
           
 Score = 34.2 bits (17), Expect = 1.3
 Identities = 20/21 (95%), Positives = 20/21 (95%)

                                
Query: 431 agcctggggtgcctaatgagt 451
           |||||||| ||||||||||||
Sbjct: 241 agcctgggctgcctaatgagt 261


  Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
    Posted date:  Mar 4, 1999  1:26 AM
  Number of letters in database: 45,673,593
  Number of sequences in database:  62,851
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8939
Number of Sequences: 62851
Number of extensions: 8939
Number of successful extensions: 647
Number of sequences better than 10: 6
length of query: 609
length of database: 45673593
effective HSP length: 18
effective length of query: 591
effective length of database: 44542275
effective search space: 26324484525
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)