BLASTN 2.0.5 [May-5-1998]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= D19Rat13
         (619 letters)

Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
           62,851 sequences; 45,673,593 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gnl|UG|Hs.108969 Mannosidase, alpha B, lysosomal /cds=(50,1021)...   119  3e-26
gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE...    88  1e-16
gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end /clone=GE...    66  4e-10
gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA63...    62  6e-09
gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc00...    50  2e-05

>gnl|UG|Hs.108969 Mannosidase, alpha B, lysosomal /cds=(50,1021)
           /gb=U68382 /gi=1663626 /len=3685
           Length = 3685
           
 Score =  119 bits (60), Expect = 3e-26
 Identities = 81/88 (92%), Positives = 81/88 (92%)

                                                                       
Query: 371 gtattaccgaaccaaccacaccgtgatgaccatgggctcagacttccagtatgagaatgc 430
           ||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||
Sbjct: 896 gtattaccgcaccaaccacactgtgatgaccatgggctcggacttccaatatgagaatgc 955

                                       
Query: 431 caacatgtggttcaaaaacatggacaag 458
           ||||||||||||||| ||| | ||||||
Sbjct: 956 caacatgtggttcaagaaccttgacaag 983


>gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end
           /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045
           /len=447
           Length = 447
           
 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 59/64 (92%), Positives = 59/64 (92%), Gaps = 1/64 (1%)

                                                                       
Query: 476 cgtaatcatggtcatagctgtttcctgtgtgaaattgttat-cgctcacaatncacacaa 534
           ||||||||||||||||||||||||   |||||||||||||| |||||||||| |||||||
Sbjct: 360 cgtaatcatggtcatagctgtttcnnntgtgaaattgttatccgctcacaattcacacaa 419

               
Query: 535 cata 538
           ||||
Sbjct: 420 cata 423


>gnl|UG|Hs.114398 HUM010A02A Homo sapiens cDNA, 3' end
           /clone=GEN-010A02 /clone_end=3' /gb=D80038 /gi=1177915
           /len=464
           Length = 464
           
 Score = 65.9 bits (33), Expect = 4e-10
 Identities = 57/64 (89%), Positives = 57/64 (89%), Gaps = 2/64 (3%)

                                                                       
Query: 476 cgtaatcatggtcatagct-gtttcctgtgtgaaattgttatcgctcacaatncacacaa 534
           |||||||||||||||||||  |||||||||| |||||||||||  ||||||| | |||||
Sbjct: 394 cgtaatcatggtcatagctsktttcctgtgt-aaattgttatccstcacaattcccacaa 452

               
Query: 535 cata 538
           ||||
Sbjct: 453 cata 456


>gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA631969
           /gi=2554580 /len=556
           Length = 556
           
 Score = 61.9 bits (31), Expect = 6e-09
 Identities = 33/34 (97%), Positives = 33/34 (97%)

                                             
Query: 476 cgtaatcatggtcatagctgtttcctgtgtgaaa 509
           |||||||||||||||| |||||||||||||||||
Sbjct: 523 cgtaatcatggtcatanctgtttcctgtgtgaaa 556


>gnl|UG|Hs.113495 hbc002C Homo sapiens cDNA, 5' end /clone=hbc002C
           /clone_end=5' /gb=T11417 /gi=391571 /len=320
           Length = 320
           
 Score = 50.1 bits (25), Expect = 2e-05
 Identities = 52/58 (89%), Positives = 52/58 (89%), Gaps = 5/58 (8%)

                                                                     
Query: 476 cgtaatcatggtcatagctgtttcctgtgtgaaattgttatcgctcacaatncacaca 533
           ||||||||||||||||||||||  |||||||||  || ||||||||||||| ||||||
Sbjct: 219 cgtaatcatggtcatagctgtt--ctgtgtgaa--tg-tatcgctcacaattcacaca 271


  Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq
    Posted date:  Mar 4, 1999  1:26 AM
  Number of letters in database: 45,673,593
  Number of sequences in database:  62,851
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12440
Number of Sequences: 62851
Number of extensions: 12440
Number of successful extensions: 895
Number of sequences better than 10: 21
length of query: 619
length of database: 45673593
effective HSP length: 18
effective length of query: 601
effective length of database: 44542275
effective search space: 26769907275
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 25 (49.6 bits)
S1: 0 ( 0.5 bits)
S2: 16 (32.2 bits)