BLASTN 2.0.5 [May-5-1998] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= D14Rat19 (561 letters) Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq 62,851 sequences; 45,673,593 total letters Searching.................................................done Score E Sequences producing significant alignments: (bits) Value gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GE... 96 4e-19 gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GE... 62 5e-09 gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA63... 46 3e-04 gnl|UG|Hs.93728 Human PBX2 mRNA /cds=UNKNOWN /gb=X59842 /gi=353... 40 0.020 gnl|UG|Hs.80684 High-mobility group (nonhistone chromosomal) pr... 38 0.079 >gnl|UG|Hs.109168 HUM041F12A Homo sapiens cDNA, 3' end /clone=GEN-041F12 /clone_end=3' /gb=D80168 /gi=1178045 /len=447 Length = 447 Score = 95.6 bits (48), Expect = 4e-19 Identities = 80/88 (90%), Positives = 80/88 (90%), Gaps = 3/88 (3%) Query: 426 cgtaatcatggtcatagc-gtttcctgtgtgaaattgtnatccgctcacaattccacaca 484 |||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||| Sbjct: 360 cgtaatcatggtcatagctgtttcnnntgtgaaattgttatccgctcacaatt-cacaca 418 Query: 485 acatatgagccgngaagcataaagtgta 512 ||||| |||||| ||||||||||||||| Sbjct: 419 acatacgagccg-gaagcataaagtgta 445 >gnl|UG|Hs.133484 HUM081G06A Homo sapiens cDNA, 3' end /clone=GEN-081G06 /clone_end=3' /gb=D80522 /gi=1178399 /len=508 Length = 508 Score = 61.9 bits (31), Expect = 5e-09 Identities = 93/110 (84%), Positives = 93/110 (84%), Gaps = 5/110 (4%) Query: 426 cgtaatcatgg-tcatagcgtttcctgtgtgaaattgtnatccgctcacaattccacaca 484 ||||||||||| ||||||| |||| |||| ||||||| ||||| ||||||||||||||| Sbjct: 393 cgtaatcatggatcatagctgttcccgtgt-aaattgttatccg-tcacaattccacaca 450 Query: 485 acatatgagccgngaagcataaagtgtanagctggggtggctnatgagtg 534 ||||| | |||| ||||||||||||| |||||||| || ||||||| Sbjct: 451 acatacgggccgg--agcataaagtgtaagcctggggtgcctaatgagtg 498 >gnl|UG|Hs.158972 fmfc36 Homo sapiens cDNA /clone=CR5-5 /gb=AA631969 /gi=2554580 /len=556 Length = 556 Score = 46.1 bits (23), Expect = 3e-04 Identities = 32/34 (94%), Positives = 32/34 (94%), Gaps = 1/34 (2%) Query: 426 cgtaatcatggtcatagc-gtttcctgtgtgaaa 458 |||||||||||||||| | ||||||||||||||| Sbjct: 523 cgtaatcatggtcatanctgtttcctgtgtgaaa 556 >gnl|UG|Hs.93728 Human PBX2 mRNA /cds=UNKNOWN /gb=X59842 /gi=35312 /len=3236 Length = 3236 Score = 40.1 bits (20), Expect = 0.020 Identities = 20/20 (100%), Positives = 20/20 (100%) Query: 408 gggtaccgagctcgaattcg 427 |||||||||||||||||||| Sbjct: 5 gggtaccgagctcgaattcg 24 >gnl|UG|Hs.80684 High-mobility group (nonhistone chromosomal) protein 2 /cds=(214,843) /gb=X62534 /gi=32332 /len=1288 Length = 1288 Score = 38.2 bits (19), Expect = 0.079 Identities = 19/19 (100%), Positives = 19/19 (100%) Query: 408 gggtaccgagctcgaattc 426 ||||||||||||||||||| Sbjct: 45 gggtaccgagctcgaattc 27 Database: /ddhome/DDsys/GenDB/UniGeneHs/Hs.seq.uniq Posted date: Mar 4, 1999 1:26 AM Number of letters in database: 45,673,593 Number of sequences in database: 62,851 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14592 Number of Sequences: 62851 Number of extensions: 14592 Number of successful extensions: 1197 Number of sequences better than 10: 39 length of query: 561 length of database: 45673593 effective HSP length: 18 effective length of query: 543 effective length of database: 44542275 effective search space: 24186455325 T: 0 A: 0 X1: 6 (11.9 bits) X2: 25 (49.6 bits) S1: 0 ( 0.5 bits) S2: 16 (32.2 bits)